Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LMJ46_RS00370 | Genome accession | NZ_CP086411 |
| Coordinates | 75975..76502 (+) | Length | 175 a.a. |
| NCBI ID | WP_010826244.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain R5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 66486..104829 | 75975..76502 | within | 0 |
Gene organization within MGE regions
Location: 66486..104829
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMJ46_RS00285 (LMJ46_00285) | - | 66486..67835 (-) | 1350 | WP_002411357.1 | recombinase family protein | - |
| LMJ46_RS00290 (LMJ46_00290) | - | 67864..68046 (-) | 183 | WP_002411356.1 | hypothetical protein | - |
| LMJ46_RS00295 (LMJ46_00295) | - | 68211..68927 (-) | 717 | WP_229017980.1 | XRE family transcriptional regulator | - |
| LMJ46_RS00300 (LMJ46_00300) | - | 69073..69279 (+) | 207 | WP_002411354.1 | helix-turn-helix domain-containing protein | - |
| LMJ46_RS00305 (LMJ46_00305) | - | 69317..69478 (+) | 162 | WP_002411353.1 | hypothetical protein | - |
| LMJ46_RS00310 (LMJ46_00310) | - | 69536..69706 (+) | 171 | WP_002357333.1 | hypothetical protein | - |
| LMJ46_RS00315 (LMJ46_00315) | - | 69700..69921 (-) | 222 | WP_229018025.1 | hypothetical protein | - |
| LMJ46_RS00320 (LMJ46_00320) | - | 69989..70204 (+) | 216 | WP_002357335.1 | hypothetical protein | - |
| LMJ46_RS00325 (LMJ46_00325) | - | 70473..71183 (+) | 711 | WP_187166539.1 | Rha family transcriptional regulator | - |
| LMJ46_RS00330 (LMJ46_00330) | - | 71194..71379 (+) | 186 | WP_002364665.1 | hypothetical protein | - |
| LMJ46_RS00335 (LMJ46_00335) | - | 71391..71567 (+) | 177 | WP_010711635.1 | hypothetical protein | - |
| LMJ46_RS00340 (LMJ46_00340) | - | 71707..72267 (-) | 561 | WP_064687099.1 | hypothetical protein | - |
| LMJ46_RS00345 (LMJ46_00345) | - | 72552..73295 (+) | 744 | WP_010708942.1 | ERF family protein | - |
| LMJ46_RS00350 (LMJ46_00350) | - | 73295..74233 (+) | 939 | WP_010783683.1 | DUF1351 domain-containing protein | - |
| LMJ46_RS00355 (LMJ46_00355) | - | 74230..74871 (+) | 642 | WP_229017981.1 | putative HNHc nuclease | - |
| LMJ46_RS00360 (LMJ46_00360) | - | 74875..75672 (+) | 798 | WP_010784194.1 | helix-turn-helix domain-containing protein | - |
| LMJ46_RS00365 (LMJ46_00365) | - | 75677..75985 (+) | 309 | WP_010822654.1 | MazG-like family protein | - |
| LMJ46_RS00370 (LMJ46_00370) | ssb | 75975..76502 (+) | 528 | WP_010826244.1 | single-stranded DNA-binding protein | Machinery gene |
| LMJ46_RS00375 (LMJ46_00375) | - | 76515..76844 (+) | 330 | WP_049097668.1 | hypothetical protein | - |
| LMJ46_RS00380 (LMJ46_00380) | - | 76864..77070 (+) | 207 | WP_002395701.1 | hypothetical protein | - |
| LMJ46_RS00385 (LMJ46_00385) | - | 77123..77863 (+) | 741 | WP_002410993.1 | hypothetical protein | - |
| LMJ46_RS00390 (LMJ46_00390) | - | 77881..78555 (+) | 675 | WP_229017982.1 | N-6 DNA methylase | - |
| LMJ46_RS00395 (LMJ46_00395) | - | 78569..79513 (+) | 945 | WP_229017983.1 | site-specific integrase | - |
| LMJ46_RS00400 (LMJ46_00400) | - | 79526..80098 (+) | 573 | WP_229017984.1 | hypothetical protein | - |
| LMJ46_RS00405 (LMJ46_00405) | - | 80082..80462 (+) | 381 | WP_010731652.1 | YopX family protein | - |
| LMJ46_RS00410 (LMJ46_00410) | - | 80463..80795 (+) | 333 | WP_229017985.1 | hypothetical protein | - |
| LMJ46_RS00415 (LMJ46_00415) | - | 80796..81074 (+) | 279 | WP_229017986.1 | hypothetical protein | - |
| LMJ46_RS00420 (LMJ46_00420) | - | 81086..81382 (+) | 297 | WP_192190748.1 | DNA-directed RNA polymerase subunit delta | - |
| LMJ46_RS00425 (LMJ46_00425) | - | 81414..81773 (+) | 360 | WP_192190749.1 | hypothetical protein | - |
| LMJ46_RS00430 (LMJ46_00430) | - | 81766..82275 (+) | 510 | WP_229017987.1 | DUF1642 domain-containing protein | - |
| LMJ46_RS00435 (LMJ46_00435) | - | 82458..82658 (+) | 201 | WP_324251477.1 | hypothetical protein | - |
| LMJ46_RS00440 (LMJ46_00440) | - | 82803..83219 (+) | 417 | WP_010711654.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| LMJ46_RS00450 (LMJ46_00450) | - | 84285..85118 (+) | 834 | WP_010784197.1 | terminase small subunit | - |
| LMJ46_RS00455 (LMJ46_00455) | - | 85108..86397 (+) | 1290 | WP_002411228.1 | PBSX family phage terminase large subunit | - |
| LMJ46_RS00460 (LMJ46_00460) | - | 86413..87912 (+) | 1500 | WP_002357369.1 | phage portal protein | - |
| LMJ46_RS00465 (LMJ46_00465) | - | 87912..89069 (+) | 1158 | WP_002411227.1 | phage minor capsid protein | - |
| LMJ46_RS00470 (LMJ46_00470) | - | 89121..89309 (+) | 189 | WP_002357372.1 | hypothetical protein | - |
| LMJ46_RS00475 (LMJ46_00475) | - | 89405..89959 (+) | 555 | WP_010826285.1 | phage scaffolding protein | - |
| LMJ46_RS00480 (LMJ46_00480) | - | 89976..90842 (+) | 867 | WP_002357374.1 | hypothetical protein | - |
| LMJ46_RS00485 (LMJ46_00485) | - | 90940..91344 (+) | 405 | WP_002411223.1 | hypothetical protein | - |
| LMJ46_RS00490 (LMJ46_00490) | - | 91338..91679 (+) | 342 | WP_002411222.1 | putative minor capsid protein | - |
| LMJ46_RS00495 (LMJ46_00495) | - | 91679..92005 (+) | 327 | WP_002411221.1 | minor capsid protein | - |
| LMJ46_RS00500 (LMJ46_00500) | - | 92005..92403 (+) | 399 | WP_002411220.1 | minor capsid protein | - |
| LMJ46_RS00505 (LMJ46_00505) | - | 92403..92882 (+) | 480 | WP_010826287.1 | phage tail tube protein | - |
| LMJ46_RS00510 (LMJ46_00510) | - | 92953..93405 (+) | 453 | WP_010784203.1 | hypothetical protein | - |
| LMJ46_RS00515 (LMJ46_00515) | - | 93458..93877 (+) | 420 | WP_002411217.1 | DUF6673 family protein | - |
| LMJ46_RS00520 (LMJ46_00520) | - | 93883..94455 (+) | 573 | WP_010784204.1 | Gp15 family bacteriophage protein | - |
| LMJ46_RS00525 (LMJ46_00525) | - | 94448..97768 (+) | 3321 | WP_033787715.1 | hypothetical protein | - |
| LMJ46_RS00530 (LMJ46_00530) | - | 97768..98529 (+) | 762 | WP_085368125.1 | distal tail protein Dit | - |
| LMJ46_RS00535 (LMJ46_00535) | - | 98526..100793 (+) | 2268 | WP_229017989.1 | phage tail spike protein | - |
| LMJ46_RS00540 (LMJ46_00540) | - | 100793..102274 (+) | 1482 | WP_229017990.1 | BppU family phage baseplate upper protein | - |
| LMJ46_RS00545 (LMJ46_00545) | - | 102351..102605 (+) | 255 | WP_229017991.1 | hemolysin XhlA family protein | - |
| LMJ46_RS00550 (LMJ46_00550) | - | 102608..102814 (+) | 207 | WP_229017992.1 | phage holin | - |
| LMJ46_RS00555 (LMJ46_00555) | - | 102817..103902 (+) | 1086 | WP_010816176.1 | SH3 domain-containing protein | - |
| LMJ46_RS00560 (LMJ46_00560) | - | 104296..104829 (+) | 534 | WP_002402066.1 | PBECR4 domain-containing protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19235.07 Da Isoelectric Point: 4.7078
>NTDB_id=624816 LMJ46_RS00370 WP_010826244.1 75975..76502(+) (ssb) [Enterococcus faecalis strain R5]
MINNVVLVGRLTKDPDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEAKSANENRNSIQSSQNSVTGVQNNFESNYAANQNKGLNQQNNSQQISFGGDVDPFA
GAGNSIDISDDDLPF
MINNVVLVGRLTKDPDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEAKSANENRNSIQSSQNSVTGVQNNFESNYAANQNKGLNQQNNSQQISFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=624816 LMJ46_RS00370 WP_010826244.1 75975..76502(+) (ssb) [Enterococcus faecalis strain R5]
ATGATAAATAATGTGGTATTAGTCGGAAGATTGACAAAAGATCCTGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGGCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGAGTTCACAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CTGCGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATATCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGTGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCGTTCTAG
ATGATAAATAATGTGGTATTAGTCGGAAGATTGACAAAAGATCCTGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGGCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGAGTTCACAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CTGCGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATATCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGTGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.989 |
100 |
0.6 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.303 |
100 |
0.583 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
60.571 |
0.36 |