Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KFS85_RS05105 Genome accession   NZ_CP086332
Coordinates   1201869..1203257 (-) Length   462 a.a.
NCBI ID   WP_237653175.1    Uniprot ID   -
Organism   Xanthomonas graminis pv. phlei strain LMG 843     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1196869..1208257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFS85_RS05075 (KFS85_05085) - 1197443..1198138 (-) 696 WP_237653171.1 transposase -
  KFS85_RS05080 (KFS85_05090) - 1198274..1198645 (-) 372 WP_053838005.1 DUF86 domain-containing protein -
  KFS85_RS05085 (KFS85_05095) - 1198642..1198932 (-) 291 WP_009580418.1 nucleotidyltransferase family protein -
  KFS85_RS05090 (KFS85_05100) pilB 1199139..1200875 (+) 1737 WP_237653172.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KFS85_RS05095 (KFS85_05105) - 1200885..1201502 (-) 618 WP_237653174.1 Fic/DOC family protein -
  KFS85_RS05100 (KFS85_05110) - 1201499..1201681 (-) 183 WP_003477093.1 YhfG family protein -
  KFS85_RS05105 (KFS85_05115) pilR 1201869..1203257 (-) 1389 WP_237653175.1 sigma-54-dependent transcriptional regulator Regulator
  KFS85_RS05110 (KFS85_05120) - 1203332..1204945 (-) 1614 WP_003477089.1 sensor histidine kinase -
  KFS85_RS05115 (KFS85_05125) sucC 1205189..1206352 (+) 1164 WP_053833739.1 ADP-forming succinate--CoA ligase subunit beta -
  KFS85_RS05120 (KFS85_05130) sucD 1206376..1207248 (+) 873 WP_237653177.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49785.18 Da        Isoelectric Point: 6.5828

>NTDB_id=624339 KFS85_RS05105 WP_237653175.1 1201869..1203257(-) (pilR) [Xanthomonas graminis pv. phlei strain LMG 843]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGVSAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASTEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=624339 KFS85_RS05105 WP_237653175.1 1201869..1203257(-) (pilR) [Xanthomonas graminis pv. phlei strain LMG 843]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGTTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGATCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGTCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTCGGCAAGGAGCTGGTCGCGCGCACCATCCATGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCACACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGACCGAAGTGCCAACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCGCGCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.527

99.351

0.621
  pilR Acinetobacter baumannii strain A118

46.868

100

0.47