Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   YB51_RS00435 Genome accession   NC_022516
Coordinates   75402..75668 (+) Length   88 a.a.
NCBI ID   WP_002939335.1    Uniprot ID   A0A126UJ45
Organism   Streptococcus suis YB51     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 73196..74452 75402..75668 flank 950


Gene organization within MGE regions


Location: 73196..75668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YB51_RS00425 (YB51_0355) - 73196..74452 (-) 1257 WP_002936184.1 ISL3-like element ISSsu6 family transposase -
  YB51_RS00430 (YB51_0365) - 74751..75329 (+) 579 Protein_65 nucleotidyltransferase family protein -
  YB51_RS00435 (YB51_0370) comX/sigX 75402..75668 (+) 267 WP_002939335.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10717.52 Da        Isoelectric Point: 9.1949

>NTDB_id=62424 YB51_RS00435 WP_002939335.1 75402..75668(+) (comX/sigX) [Streptococcus suis YB51]
MEFETVCLKVRNLGRLYCYFKVKFRNHIEAIIRKQESQKCKFDRLFHEDIHSLIQSPSLGNDELLMLWGLLRDYRKNLIN
DRLENMKN

Nucleotide


Download         Length: 267 bp        

>NTDB_id=62424 YB51_RS00435 WP_002939335.1 75402..75668(+) (comX/sigX) [Streptococcus suis YB51]
ATGGAATTTGAAACGGTTTGTTTGAAGGTTAGAAACTTAGGTAGGCTATATTGCTACTTCAAAGTTAAATTTAGAAACCA
TATCGAGGCTATAATTCGTAAACAGGAAAGTCAAAAATGTAAATTTGATCGTCTCTTCCATGAAGATATTCATAGTTTGA
TTCAATCACCGAGCTTGGGTAATGATGAGTTGCTGATGTTATGGGGTCTCCTGAGAGATTATCGAAAAAATTTAATCAAT
GACCGACTTGAAAATATGAAAAATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126UJ45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

73.973

82.955

0.614
  comX/sigX Streptococcus suis isolate S10

72.603

82.955

0.602
  comX/sigX Streptococcus suis P1/7

72.603

82.955

0.602
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

39.506

92.045

0.364
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

39.506

92.045

0.364

Multiple sequence alignment