Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SA40_RS07550 Genome accession   NC_022443
Coordinates   1564142..1564588 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus SA40     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559142..1569588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA40_RS07520 (SA40_1407) gcvPA 1560068..1561414 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SA40_RS07525 (SA40_1408) gcvT 1561434..1562525 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  SA40_RS07530 (SA40_1409) - 1562684..1563208 (-) 525 WP_001015116.1 shikimate kinase -
  SA40_RS07535 - 1563198..1563344 (-) 147 WP_001789879.1 hypothetical protein -
  SA40_RS07540 (SA40_1410) comGF 1563441..1563938 (-) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  SA40_RS07545 (SA40_1411) comGE 1563856..1564155 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  SA40_RS07550 (SA40_1412) comGD 1564142..1564588 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  SA40_RS07555 (SA40_1413) comGC 1564566..1564877 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SA40_RS07560 (SA40_1414) comGB 1564891..1565961 (-) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  SA40_RS07565 (SA40_1415) comGA 1565933..1566907 (-) 975 WP_000697218.1 competence type IV pilus ATPase ComGA Machinery gene
  SA40_RS07570 (SA40_1416) - 1566959..1567582 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SA40_RS07575 (SA40_1417) - 1567579..1567908 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SA40_RS07580 (SA40_1418) - 1567908..1568894 (-) 987 WP_000161315.1 ROK family glucokinase -
  SA40_RS07585 (SA40_1419) - 1568891..1569094 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=62398 SA40_RS07550 WP_001796473.1 1564142..1564588(-) (comGD) [Staphylococcus aureus subsp. aureus SA40]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=62398 SA40_RS07550 WP_001796473.1 1564142..1564588(-) (comGD) [Staphylococcus aureus subsp. aureus SA40]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment