Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SA40_RS04650 Genome accession   NC_022443
Coordinates   958682..959668 (+) Length   328 a.a.
NCBI ID   WP_000959298.1    Uniprot ID   A0A6A9GY92
Organism   Staphylococcus aureus subsp. aureus SA40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 953682..964668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA40_RS04630 (SA40_0862) - 954120..955766 (+) 1647 WP_021758234.1 IS1182-like element ISSau3 family transposase -
  SA40_RS04635 (SA40_0863) trpS 955792..956781 (-) 990 WP_000448937.1 tryptophan--tRNA ligase -
  SA40_RS04640 (SA40_0864) spxA 957076..957471 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SA40_RS04645 (SA40_0865) mecA 957842..958561 (+) 720 WP_001217728.1 adaptor protein MecA -
  SA40_RS04650 (SA40_0866) coiA 958682..959668 (+) 987 WP_000959298.1 competence protein CoiA family protein Machinery gene
  SA40_RS04655 (SA40_0867) pepF 959716..961524 (+) 1809 WP_021758235.1 oligoendopeptidase F -
  SA40_RS04660 (SA40_0868) yjbH 961984..962790 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  SA40_RS04665 (SA40_0869) - 962813..963178 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  SA40_RS04670 (SA40_0870) - 963282..963875 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  SA40_RS04675 (SA40_0871) - 964061..964408 (+) 348 WP_001242107.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38745.27 Da        Isoelectric Point: 9.6529

>NTDB_id=62389 SA40_RS04650 WP_000959298.1 958682..959668(+) (coiA) [Staphylococcus aureus subsp. aureus SA40]
MLVALNGEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLESDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=62389 SA40_RS04650 WP_000959298.1 958682..959668(+) (coiA) [Staphylococcus aureus subsp. aureus SA40]
ATGTTAGTAGCTTTAAATGGAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGAAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(10-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A9GY92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.646

100

0.966
  coiA Staphylococcus aureus N315

96.646

100

0.966

Multiple sequence alignment