Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LJY09_RS25460 Genome accession   NZ_CP086208
Coordinates   4909424..4909786 (-) Length   120 a.a.
NCBI ID   WP_028411997.1    Uniprot ID   -
Organism   Priestia sp. J2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4904424..4914786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY09_RS25450 - 4905167..4907797 (+) 2631 WP_228307456.1 DEAD/DEAH box helicase -
  LJY09_RS25455 - 4908095..4909141 (+) 1047 WP_028411998.1 LysM peptidoglycan-binding domain-containing protein -
  LJY09_RS25460 ssbB 4909424..4909786 (-) 363 WP_028411997.1 single-stranded DNA-binding protein Machinery gene
  LJY09_RS25465 - 4909883..4910320 (+) 438 WP_099331342.1 YwpF family protein -
  LJY09_RS25470 - 4910844..4911266 (+) 423 WP_099331343.1 helix-turn-helix domain-containing protein -
  LJY09_RS25475 fabZ 4911295..4911729 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LJY09_RS25480 - 4911813..4912634 (-) 822 WP_099331344.1 flagellar hook-basal body protein -
  LJY09_RS25485 - 4912658..4913482 (-) 825 WP_228307457.1 flagellar hook-basal body protein -
  LJY09_RS25490 - 4913597..4914598 (-) 1002 WP_013059791.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13412.09 Da        Isoelectric Point: 7.1647

>NTDB_id=623743 LJY09_RS25460 WP_028411997.1 4909424..4909786(-) (ssbB) [Priestia sp. J2]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSDSSSFGSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=623743 LJY09_RS25460 WP_028411997.1 4909424..4909786(-) (ssbB) [Priestia sp. J2]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAGCCGGAGCTTCGATATACCCATGAAGGGATTGCCGTATC
TACTATTACGTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACAGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGCGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCGGTTAAATTTTTAAGTGGAAAGCC
ATCTGATTCTTCTTCATTTGGTTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

93.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508