Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LJX92_RS15435 Genome accession   NZ_CP086206
Coordinates   3510259..3512484 (-) Length   741 a.a.
NCBI ID   WP_228308573.1    Uniprot ID   -
Organism   Pseudomonas sp. HN8-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3505259..3517484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJX92_RS15400 (LJX92_15420) murB 3505630..3506649 (-) 1020 WP_228308571.1 UDP-N-acetylmuramate dehydrogenase -
  LJX92_RS15405 (LJX92_15425) - 3506646..3507110 (-) 465 WP_078821648.1 low molecular weight protein-tyrosine-phosphatase -
  LJX92_RS15410 (LJX92_15430) kdsB 3507110..3507874 (-) 765 WP_032880648.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LJX92_RS15415 (LJX92_15435) - 3507871..3508056 (-) 186 WP_003174668.1 Trm112 family protein -
  LJX92_RS15420 (LJX92_15440) lpxK 3508079..3509089 (-) 1011 WP_228308572.1 tetraacyldisaccharide 4'-kinase -
  LJX92_RS15425 (LJX92_15445) - 3509089..3509517 (-) 429 WP_032880645.1 ExbD/TolR family protein -
  LJX92_RS15430 (LJX92_15450) exbB 3509514..3510149 (-) 636 WP_005789055.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LJX92_RS15435 (LJX92_15455) comA 3510259..3512484 (-) 2226 WP_228308573.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LJX92_RS15440 (LJX92_15460) - 3512620..3513135 (+) 516 WP_005789057.1 DUF2062 domain-containing protein -
  LJX92_RS15445 (LJX92_15465) - 3513139..3514497 (-) 1359 WP_078821650.1 sensor histidine kinase -
  LJX92_RS15450 (LJX92_15470) - 3514484..3515212 (-) 729 WP_005789059.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80265.26 Da        Isoelectric Point: 10.5103

>NTDB_id=623675 LJX92_RS15435 WP_228308573.1 3510259..3512484(-) (comA) [Pseudomonas sp. HN8-3]
MKTGMFALALGLLVLRWLPALPSGAGLLAMLILALMLLPFRTYPVAFFLVGLSWACISAQWALDDRLQPALDGQTRWVQG
RVIGLPQQTGTGVRFELADSRARNARLPKRIRVSWHGGPTVNSGEYWRLALTLKRPAGLLNFHGFDHEAWLLAQRIGASA
TVKDGERLAPARNAWRDAVRQRLMAVEAHGREAGLAALVLGDGSGLAPEDWQVLQNTGTVHLLVISGQHIGLLAGLIYGL
ISMLARYGCWPRGWPWLPWACGLAFAGALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALNGVLLIEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGPWSVWQIWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLVAVPWISLVVLPLAL
LGTALLWVPLVGEGVLWLAGGALDGLFKGLALLAAQLPAWVPAEVPLRYWLVSLAGAVIVLLPKGLPFRVLGWPMLLVAV
FPPRDGVPHGQVEVLQLDVGQGQALILRTRHHTLLYDAGPRSGPVDLGARVVLPSLQKLGVGRLDMMLLSHADADHAGGA
TAVGRGLPIKRVVGGETEGLPAFLATQPCRSGEHWEWDGVAFELWQWPGAIEGNPKSCVLQVQANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWPFLQRLAPTAVLISRGRGNAFGHPHPQVLERYQALGSRVYDSAEQGAVQLRL
GAFTPPTVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=623675 LJX92_RS15435 WP_228308573.1 3510259..3512484(-) (comA) [Pseudomonas sp. HN8-3]
ATGAAAACAGGGATGTTCGCGCTGGCGCTGGGGTTGCTGGTATTGCGCTGGTTACCCGCATTGCCGTCTGGCGCCGGGTT
GCTGGCTATGCTGATACTGGCCTTGATGCTGCTGCCTTTTCGTACCTATCCTGTGGCGTTTTTTCTGGTCGGCCTGAGTT
GGGCCTGCATCAGCGCACAGTGGGCGCTGGATGATCGATTGCAACCGGCGCTGGACGGGCAGACGCGCTGGGTACAAGGG
CGTGTCATCGGCTTGCCGCAGCAGACCGGCACGGGCGTGCGATTCGAGTTGGCCGACAGTCGGGCGCGCAATGCACGGCT
GCCCAAACGTATCCGGGTGTCCTGGCACGGCGGGCCGACCGTAAACAGCGGCGAGTACTGGCGTCTGGCACTGACGCTCA
AGCGGCCCGCCGGCCTGCTCAATTTTCATGGCTTTGACCACGAAGCCTGGCTGCTGGCCCAGCGTATCGGCGCCAGCGCG
ACGGTGAAGGATGGTGAGCGCCTGGCGCCGGCGCGCAATGCCTGGCGCGATGCCGTTCGCCAGCGCCTGATGGCCGTGGA
AGCGCACGGCCGCGAGGCGGGCCTGGCGGCGTTGGTGCTGGGCGACGGTTCCGGGCTTGCACCTGAGGATTGGCAGGTGT
TGCAGAACACCGGCACGGTGCATCTGCTGGTGATTTCCGGACAGCACATTGGTTTGTTGGCGGGGTTGATCTACGGCTTG
ATCTCTATGTTGGCGCGCTATGGCTGCTGGCCGCGAGGCTGGCCATGGCTGCCATGGGCGTGCGGCTTGGCGTTTGCCGG
GGCGTTGGGCTATGGCCTGCTGGCAGGGTTCGGCGTGCCGGTGCAGCGGGCTTGTGTGATGGTGGGCCTGGTGCTGCTGT
GGCGTTTGCGTTTTCGCCATTTGGGGGTGTGGTGGCCGTTGTTGCTGGCATTGAATGGCGTGTTGCTCATCGAGCCCTTG
GCCAGTCTACAGCCGGGGTTCTGGTTGTCGTTTGCGGCGGTCGCGGTGTTGGTGTTGGCATTCAGCGGGCGCCTGGGACC
GTGGAGCGTCTGGCAAATCTGGACCCGTCCACAGTGGTTGATCGCAATTGGCTTGTTTCCGGTCCTGCTGGTGTTGGGGT
TGCCCATCAGCCTCAGTGCCCCCGTGGCCAATCTGGTCGCCGTGCCCTGGATCAGCCTGGTGGTACTGCCTTTGGCGCTG
CTGGGCACGGCGCTGCTGTGGGTGCCGTTGGTCGGCGAGGGCGTGTTGTGGCTGGCCGGTGGCGCACTGGACGGATTGTT
CAAGGGCCTGGCGCTGCTCGCTGCACAACTGCCGGCCTGGGTACCGGCTGAGGTACCTTTGAGGTATTGGCTGGTGAGCC
TGGCGGGCGCAGTGATTGTGTTGTTGCCCAAGGGGCTGCCGTTCCGAGTGCTGGGTTGGCCCATGCTGTTGGTGGCAGTG
TTTCCACCCAGGGATGGGGTGCCCCATGGCCAGGTGGAGGTGTTGCAACTGGATGTCGGCCAGGGCCAGGCACTGATCCT
GCGTACCCGCCATCACACCTTGCTCTACGATGCCGGCCCGCGCTCGGGGCCTGTCGATCTGGGCGCGCGCGTGGTCTTGC
CGTCGTTGCAGAAGCTCGGGGTAGGGCGGTTGGACATGATGCTGCTCAGTCATGCCGATGCCGATCATGCCGGAGGTGCG
ACGGCGGTGGGCCGTGGCCTGCCCATAAAGCGTGTAGTAGGCGGTGAAACCGAAGGGCTGCCAGCGTTTCTTGCTACGCA
ACCCTGCAGGAGCGGTGAACATTGGGAGTGGGACGGCGTGGCATTCGAACTGTGGCAATGGCCTGGTGCTATCGAGGGCA
ATCCGAAATCCTGTGTATTGCAGGTCCAGGCCAACGGTGAACGCTTGCTGCTCACCGGTGATATCGATCGCGCCGCCGAG
CAAGCATTTCTGGCCTCGCCGCTGGCGGTTCCGACCGACTGGCTGCAAGCCCCGCACCATGGCAGCCGCAGTTCTTCGTC
CTGGCCTTTCCTGCAGCGGCTGGCGCCAACCGCGGTGCTGATTTCCCGGGGGCGCGGCAACGCGTTCGGTCATCCGCATC
CGCAGGTGCTGGAGCGCTATCAGGCGCTGGGTAGCCGGGTATATGACAGTGCCGAGCAAGGCGCTGTACAGCTGCGCCTG
GGGGCATTCACGCCACCAACGGTTGCGCGCAGTCAACGTCGTTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.666

97.031

0.579
  comA Ralstonia pseudosolanacearum GMI1000

34.509

100

0.37