Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LJX92_RS15430 Genome accession   NZ_CP086206
Coordinates   3509514..3510149 (-) Length   211 a.a.
NCBI ID   WP_005789055.1    Uniprot ID   A0A7S7MQG5
Organism   Pseudomonas sp. HN8-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3504514..3515149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJX92_RS15395 (LJX92_15415) - 3504889..3505560 (+) 672 WP_003192030.1 Bax inhibitor-1/YccA family protein -
  LJX92_RS15400 (LJX92_15420) murB 3505630..3506649 (-) 1020 WP_228308571.1 UDP-N-acetylmuramate dehydrogenase -
  LJX92_RS15405 (LJX92_15425) - 3506646..3507110 (-) 465 WP_078821648.1 low molecular weight protein-tyrosine-phosphatase -
  LJX92_RS15410 (LJX92_15430) kdsB 3507110..3507874 (-) 765 WP_032880648.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LJX92_RS15415 (LJX92_15435) - 3507871..3508056 (-) 186 WP_003174668.1 Trm112 family protein -
  LJX92_RS15420 (LJX92_15440) lpxK 3508079..3509089 (-) 1011 WP_228308572.1 tetraacyldisaccharide 4'-kinase -
  LJX92_RS15425 (LJX92_15445) - 3509089..3509517 (-) 429 WP_032880645.1 ExbD/TolR family protein -
  LJX92_RS15430 (LJX92_15450) exbB 3509514..3510149 (-) 636 WP_005789055.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LJX92_RS15435 (LJX92_15455) comA 3510259..3512484 (-) 2226 WP_228308573.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LJX92_RS15440 (LJX92_15460) - 3512620..3513135 (+) 516 WP_005789057.1 DUF2062 domain-containing protein -
  LJX92_RS15445 (LJX92_15465) - 3513139..3514497 (-) 1359 WP_078821650.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22912.07 Da        Isoelectric Point: 7.3615

>NTDB_id=623674 LJX92_RS15430 WP_005789055.1 3509514..3510149(-) (exbB) [Pseudomonas sp. HN8-3]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=623674 LJX92_RS15430 WP_005789055.1 3509514..3510149(-) (exbB) [Pseudomonas sp. HN8-3]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTAACCCCTGAACACCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AACAGCTCGACAAGCAAAAACTCAAGGAGCTGCGCGCCAATTCGCCGCTGGGTGAAATCCTCGCTGCCGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCGGCTGCCCGGGTTATCCATGAACTGGAGCGCTACAT
CAATGCCCTCGGCACCATTGCCGCCATGGCACCGCTGCTCGGTTTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGTTCGGGCATGACCACCAACGCGGCAGTATTGGCCGGGGGGATTTCCAAGGCATTGATCACCACCGCC
GCCGGCCTGATGGTGGGGATTCCTTCGGTGTTCTTCCACCGCTTCCTGCAGCGTCGCATCGACGAACTGGTGGTTGGCAT
GGAACAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGACGTAGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7MQG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863