Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   LL142_RS07320 Genome accession   NZ_CP086168
Coordinates   1434003..1435184 (-) Length   393 a.a.
NCBI ID   WP_032590155.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CMP10190     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1429003..1440184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL142_RS07290 (LL142_07290) - 1429548..1429889 (+) 342 WP_032590145.1 hypothetical protein -
  LL142_RS07295 (LL142_07295) flgM 1429952..1430149 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  LL142_RS07300 (LL142_07300) - 1430191..1430625 (+) 435 WP_002779263.1 flagellar protein FlgN -
  LL142_RS07305 (LL142_07305) flgK 1430635..1432461 (+) 1827 WP_052785931.1 flagellar hook-associated protein FlgK -
  LL142_RS07310 (LL142_07310) - 1432478..1433242 (+) 765 WP_071170296.1 TIGR02757 family protein -
  LL142_RS07315 (LL142_07315) - 1433246..1434010 (+) 765 WP_002855301.1 TSUP family transporter -
  LL142_RS07320 (LL142_07320) ctsF 1434003..1435184 (-) 1182 WP_032590155.1 type II secretion system F family protein Machinery gene
  LL142_RS07325 (LL142_07325) ctsE 1435181..1436740 (-) 1560 WP_052834459.1 GspE/PulE family protein Machinery gene
  LL142_RS07330 (LL142_07330) ctsX 1436730..1437317 (-) 588 WP_002899082.1 hypothetical protein Machinery gene
  LL142_RS07335 (LL142_07335) ctsP 1437321..1437929 (-) 609 WP_002899084.1 ATP-binding protein Machinery gene
  LL142_RS07340 (LL142_07340) mshL 1437922..1439333 (-) 1412 Protein_1424 pilus (MSHA type) biogenesis protein MshL -
  LL142_RS07345 (LL142_07345) ctsR 1439311..1439622 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45760.36 Da        Isoelectric Point: 9.0938

>NTDB_id=623196 LL142_RS07320 WP_032590155.1 1434003..1435184(-) (ctsF) [Campylobacter jejuni strain CMP10190]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=623196 LL142_RS07320 WP_032590155.1 1434003..1435184(-) (ctsF) [Campylobacter jejuni strain CMP10190]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTTAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987