Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   LL142_RS07335 Genome accession   NZ_CP086168
Coordinates   1437321..1437929 (-) Length   202 a.a.
NCBI ID   WP_002899084.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CMP10190     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1432321..1442929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL142_RS07310 (LL142_07310) - 1432478..1433242 (+) 765 WP_071170296.1 TIGR02757 family protein -
  LL142_RS07315 (LL142_07315) - 1433246..1434010 (+) 765 WP_002855301.1 TSUP family transporter -
  LL142_RS07320 (LL142_07320) ctsF 1434003..1435184 (-) 1182 WP_032590155.1 type II secretion system F family protein Machinery gene
  LL142_RS07325 (LL142_07325) ctsE 1435181..1436740 (-) 1560 WP_052834459.1 GspE/PulE family protein Machinery gene
  LL142_RS07330 (LL142_07330) ctsX 1436730..1437317 (-) 588 WP_002899082.1 hypothetical protein Machinery gene
  LL142_RS07335 (LL142_07335) ctsP 1437321..1437929 (-) 609 WP_002899084.1 ATP-binding protein Machinery gene
  LL142_RS07340 (LL142_07340) mshL 1437922..1439333 (-) 1412 Protein_1424 pilus (MSHA type) biogenesis protein MshL -
  LL142_RS07345 (LL142_07345) ctsR 1439311..1439622 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23773.75 Da        Isoelectric Point: 9.8159

>NTDB_id=623199 LL142_RS07335 WP_002899084.1 1437321..1437929(-) (ctsP) [Campylobacter jejuni strain CMP10190]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQSQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFELKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=623199 LL142_RS07335 WP_002899084.1 1437321..1437929(-) (ctsP) [Campylobacter jejuni strain CMP10190]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGCGGTAAAAGTGTATTATTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAAGTCAGAGTTTAATCATTCTTGAT
GAAGTAGGAATGTATGATTATGCAATGCTAGAAAGCATTAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTGAATTGAAAAATATTAGTCTTT
TAGAGCTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

98.515

100

0.985