Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   LL142_RS07345 Genome accession   NZ_CP086168
Coordinates   1439311..1439622 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CMP10190     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1434311..1444622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL142_RS07325 (LL142_07325) ctsE 1435181..1436740 (-) 1560 WP_052834459.1 GspE/PulE family protein Machinery gene
  LL142_RS07330 (LL142_07330) ctsX 1436730..1437317 (-) 588 WP_002899082.1 hypothetical protein Machinery gene
  LL142_RS07335 (LL142_07335) ctsP 1437321..1437929 (-) 609 WP_002899084.1 ATP-binding protein Machinery gene
  LL142_RS07340 (LL142_07340) mshL 1437922..1439333 (-) 1412 Protein_1424 pilus (MSHA type) biogenesis protein MshL -
  LL142_RS07345 (LL142_07345) ctsR 1439311..1439622 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  LL142_RS07350 (LL142_07350) nifJ 1439646..1443206 (-) 3561 WP_199381407.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  LL142_RS07355 (LL142_07355) - 1443299..1443939 (-) 641 Protein_1427 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=623200 LL142_RS07345 WP_002862131.1 1439311..1439622(-) (ctsR) [Campylobacter jejuni strain CMP10190]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=623200 LL142_RS07345 WP_002862131.1 1439311..1439622(-) (ctsR) [Campylobacter jejuni strain CMP10190]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99