Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | LLZ92_RS07810 | Genome accession | NZ_CP086126 |
| Coordinates | 1517988..1518890 (+) | Length | 300 a.a. |
| NCBI ID | WP_058611612.1 | Uniprot ID | - |
| Organism | Mammaliicoccus sciuri strain MIN-176 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1512988..1523890
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLZ92_RS07770 (LLZ92_07775) | - | 1513072..1513626 (+) | 555 | WP_058611616.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| LLZ92_RS07775 (LLZ92_07780) | - | 1513627..1515075 (+) | 1449 | WP_058611615.1 | rhomboid family protein | - |
| LLZ92_RS07780 (LLZ92_07785) | - | 1515080..1515271 (+) | 192 | WP_078099923.1 | YqgQ family protein | - |
| LLZ92_RS07785 (LLZ92_07790) | - | 1515268..1516239 (+) | 972 | WP_025904167.1 | ROK family glucokinase | - |
| LLZ92_RS07790 (LLZ92_07795) | - | 1516239..1516553 (+) | 315 | WP_058611614.1 | MTH1187 family thiamine-binding protein | - |
| LLZ92_RS07795 (LLZ92_07800) | - | 1516583..1516822 (-) | 240 | WP_016911885.1 | DUF2759 domain-containing protein | - |
| LLZ92_RS07800 (LLZ92_07805) | - | 1516920..1517552 (+) | 633 | WP_058611613.1 | MBL fold metallo-hydrolase | - |
| LLZ92_RS07805 (LLZ92_07810) | - | 1517586..1517834 (-) | 249 | WP_025904960.1 | DUF2626 family protein | - |
| LLZ92_RS07810 (LLZ92_07815) | comGA | 1517988..1518890 (+) | 903 | WP_058611612.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LLZ92_RS07815 (LLZ92_07820) | comGB | 1518880..1519920 (+) | 1041 | WP_077152202.1 | competence type IV pilus assembly protein ComGB | - |
| LLZ92_RS07820 (LLZ92_07825) | comGC | 1519935..1520252 (+) | 318 | WP_058611611.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LLZ92_RS07825 (LLZ92_07830) | comGD | 1520233..1520679 (+) | 447 | WP_227531649.1 | competence type IV pilus minor pilin ComGD | - |
| LLZ92_RS07830 (LLZ92_07835) | comGE | 1520663..1520944 (+) | 282 | WP_058611610.1 | competence type IV pilus minor pilin ComGE | - |
| LLZ92_RS07835 (LLZ92_07840) | - | 1520919..1521353 (+) | 435 | WP_049318781.1 | competence type IV pilus minor pilin ComGF | - |
| LLZ92_RS07840 (LLZ92_07845) | - | 1521588..1522076 (+) | 489 | WP_058611609.1 | shikimate kinase | - |
| LLZ92_RS07845 (LLZ92_07850) | gcvT | 1522269..1523357 (+) | 1089 | WP_206543506.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 300 a.a. Molecular weight: 34405.30 Da Isoelectric Point: 6.1198
>NTDB_id=622697 LLZ92_RS07810 WP_058611612.1 1517988..1518890(+) (comGA) [Mammaliicoccus sciuri strain MIN-176]
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGQYLF
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGQYLF
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
Nucleotide
Download Length: 903 bp
>NTDB_id=622697 LLZ92_RS07810 WP_058611612.1 1517988..1518890(+) (comGA) [Mammaliicoccus sciuri strain MIN-176]
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTCAATTCTAATGCGAGTGATATTCATTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAATGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGACTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCAATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTCAATTCTAATGCGAGTGATATTCATTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAATGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGACTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCAATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
52.143 |
93.333 |
0.487 |
| comGA | Staphylococcus aureus N315 |
52.143 |
93.333 |
0.487 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
40.58 |
92 |
0.373 |
| pilB | Haemophilus influenzae Rd KW20 |
35.032 |
100 |
0.367 |