Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   LK685_RS01895 Genome accession   NZ_CP086061
Coordinates   371505..371624 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus sp. BC1-43     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 366505..376624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS01875 (LK685_01880) - 366872..368947 (-) 2076 WP_144482919.1 transglycosylase domain-containing protein -
  LK685_RS01880 (LK685_01885) speE 369150..369980 (+) 831 WP_003227543.1 spermidine synthase -
  LK685_RS01885 (LK685_01890) speB 370041..370913 (+) 873 WP_015250983.1 agmatinase -
  LK685_RS01890 (LK685_01895) - 370945..371407 (-) 463 Protein_374 YbaK/EbsC family protein -
  LK685_RS01895 (LK685_01900) phrF 371505..371624 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  LK685_RS01900 (LK685_01905) rapF 371608..372753 (-) 1146 WP_029318693.1 response regulator aspartate phosphatase RapF Regulator
  LK685_RS21860 - 372756..372986 (+) 231 Protein_377 hypothetical protein -
  LK685_RS01905 (LK685_01910) - 372983..374338 (+) 1356 WP_229762623.1 YncE family protein -
  LK685_RS01910 (LK685_01915) - 374378..375754 (+) 1377 WP_229762624.1 YncE family protein -
  LK685_RS01915 (LK685_01920) albG 375760..376461 (-) 702 WP_029726080.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=622142 LK685_RS01895 WP_009968329.1 371505..371624(-) (phrF) [Bacillus sp. BC1-43]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=622142 LK685_RS01895 WP_009968329.1 371505..371624(-) (phrF) [Bacillus sp. BC1-43]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487