Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   LJC78_RS20065 Genome accession   NZ_CP086007
Coordinates   3738402..3738521 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3733402..3743521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS20045 (LJC78_20045) albG 3733566..3734267 (+) 702 WP_014481222.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  LJC78_RS20050 (LJC78_20050) ywhL 3734273..3735649 (-) 1377 WP_014481223.1 YncE family protein -
  LJC78_RS20055 (LJC78_20055) ywhK 3735688..3737043 (-) 1356 WP_014481224.1 YncE family protein -
  LJC78_RS22160 - 3737040..3737270 (-) 231 Protein_3897 hypothetical protein -
  LJC78_RS20060 (LJC78_20060) rapF 3737273..3738418 (+) 1146 WP_014481226.1 response regulator aspartate phosphatase RapF Regulator
  LJC78_RS20065 (LJC78_20065) phrF 3738402..3738521 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  LJC78_RS20070 (LJC78_20070) - 3738619..3739046 (+) 428 Protein_3900 YbaK/EbsC family protein -
  LJC78_RS20075 (LJC78_20075) speB 3739111..3739983 (-) 873 WP_003227545.1 agmatinase -
  LJC78_RS20080 (LJC78_20080) speE 3740044..3740874 (-) 831 WP_003227543.1 spermidine synthase -
  LJC78_RS20085 (LJC78_20085) pbpG 3741076..3743151 (+) 2076 WP_014481227.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=622007 LJC78_RS20065 WP_009968329.1 3738402..3738521(+) (phrF) [Bacillus subtilis subsp. natto strain SCP010-1]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=622007 LJC78_RS20065 WP_009968329.1 3738402..3738521(+) (phrF) [Bacillus subtilis subsp. natto strain SCP010-1]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487