Detailed information NTG0622006

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: LJC78_RS20060
• Genome accession: NZ_CP086007
• Coordinates: 3737273..3738418 (+)
• Length: 381 a.a.
• NCBI ID: WP_014481226.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. natto strain SCP010-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3732273..3743418

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJC78_RS20040 (LJC78_20040)	albF	3732289..3733569 (+)	1281	WP_014481221.1	M16 family metallopeptidase	-
LJC78_RS20045 (LJC78_20045)	albG	3733566..3734267 (+)	702	WP_014481222.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
LJC78_RS20050 (LJC78_20050)	ywhL	3734273..3735649 (-)	1377	WP_014481223.1	YncE family protein	-
LJC78_RS20055 (LJC78_20055)	ywhK	3735688..3737043 (-)	1356	WP_014481224.1	YncE family protein	-
LJC78_RS22160	-	3737040..3737270 (-)	231	Protein_3897	hypothetical protein	-
LJC78_RS20060 (LJC78_20060)	rapF	3737273..3738418 (+)	1146	WP_014481226.1	response regulator aspartate phosphatase RapF	Regulator
LJC78_RS20065 (LJC78_20065)	phrF	3738402..3738521 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
LJC78_RS20070 (LJC78_20070)	-	3738619..3739046 (+)	428	Protein_3900	YbaK/EbsC family protein	-
LJC78_RS20075 (LJC78_20075)	speB	3739111..3739983 (-)	873	WP_003227545.1	agmatinase	-
LJC78_RS20080 (LJC78_20080)	speE	3740044..3740874 (-)	831	WP_003227543.1	spermidine synthase	-
LJC78_RS20085 (LJC78_20085)	pbpG	3741076..3743151 (+)	2076	WP_014481227.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45627.12 Da
• Isoelectric Point: 5.1503

>NTDB_id=622006 LJC78_RS20060 WP_014481226.1 3737273..3738418(+) (rapF) [Bacillus subtilis subsp. natto strain SCP010-1]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=622006 LJC78_RS20060 WP_014481226.1 3737273..3738418(+) (rapF) [Bacillus subtilis subsp. natto strain SCP010-1]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	99.738	100	0.997
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572