Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SCD_RS10395 Genome accession   NC_022357
Coordinates   2146862..2148241 (-) Length   459 a.a.
NCBI ID   WP_009205108.1    Uniprot ID   S6B5V4
Organism   Sulfuricella denitrificans skB26     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2141862..2153241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCD_RS10375 (SCD_00378) ampD 2142226..2142783 (-) 558 WP_009205104.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  SCD_RS10380 (SCD_00379) - 2142780..2143118 (-) 339 WP_161626933.1 co-chaperone YbbN -
  SCD_RS10385 (SCD_00380) - 2143159..2144163 (+) 1005 WP_009205106.1 sodium:calcium antiporter -
  SCD_RS10390 (SCD_00381) - 2144300..2146789 (+) 2490 WP_009205107.1 glycogen/starch/alpha-glucan phosphorylase -
  SCD_RS10395 (SCD_00382) pilR 2146862..2148241 (-) 1380 WP_009205108.1 sigma-54 dependent transcriptional regulator Regulator
  SCD_RS10400 (SCD_00383) - 2148238..2149839 (-) 1602 WP_009205109.1 PAS domain-containing sensor histidine kinase -
  SCD_RS17005 - 2149882..2150106 (-) 225 WP_269763866.1 PP0621 family protein -
  SCD_RS10415 (SCD_00386) ispB 2150247..2151215 (-) 969 WP_009205111.1 octaprenyl diphosphate synthase -
  SCD_RS10420 (SCD_00387) rplU 2151394..2151708 (+) 315 WP_009205112.1 50S ribosomal protein L21 -
  SCD_RS10425 (SCD_00388) rpmA 2151721..2151978 (+) 258 WP_009205113.1 50S ribosomal protein L27 -
  SCD_RS10430 (SCD_00389) cgtA 2152045..2153100 (+) 1056 WP_009205114.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50607.48 Da        Isoelectric Point: 5.2821

>NTDB_id=62195 SCD_RS10395 WP_009205108.1 2146862..2148241(-) (pilR) [Sulfuricella denitrificans skB26]
MNRTLPVSRNNEEQPRRVLVVDDEADIRELLVMTLQRMGLDVDAAASTFEAEQYLHKNYYNLCLTDMRLPDGDGLGFLEY
VTKNYPGKPVAVITAYGSAENAVAALKAGAFDYLSKPVSLAQLRALVNSALKLPSSSQSRKIEENQTAVGQPVLLGNSPL
MLQTRQMIAKLARSQAPIHISGESGSGKELAARLLHLDGPRGDAPFVAVNCGAIPENLMESEFFGYKKGAFTGANQDKEG
FFQAAAGGTLFLDEVADLPLPMQVKLLRVIQEKMVRKVGATQEEPVDVRIISATHQDLTLCVESGKFRQDLFYRLNVIVL
KMPALREIPDDIPLLAGEMLKKMAGLNTEPPKLSLAALKDLQEYDFPGNVREMENILERAMALTTGGEICPEDLQLAAKQ
PKDMAQMKSLPLQEYLDAVEKEAILEALEKTRFNKTAAAKLLGITFRALRYRLERLGMD

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=62195 SCD_RS10395 WP_009205108.1 2146862..2148241(-) (pilR) [Sulfuricella denitrificans skB26]
TTGAACCGGACACTGCCAGTTTCTCGGAATAACGAAGAGCAACCGCGCCGTGTGCTGGTTGTGGATGACGAAGCCGACAT
CCGCGAACTGCTGGTAATGACGTTGCAGCGCATGGGCTTGGATGTCGATGCGGCGGCTAGCACGTTCGAAGCGGAGCAGT
ACCTGCACAAGAATTACTATAATCTTTGTCTTACCGACATGCGTTTGCCAGACGGGGATGGCCTTGGTTTTCTGGAATAT
GTGACCAAAAATTACCCCGGCAAACCGGTGGCGGTGATCACCGCCTACGGCAGCGCTGAAAATGCGGTCGCCGCCCTAAA
GGCGGGCGCATTCGATTACCTTTCCAAGCCGGTTTCCCTGGCCCAGTTGCGTGCGCTGGTCAATTCCGCGCTCAAATTGC
CCAGCTCAAGTCAGTCAAGAAAAATAGAAGAAAACCAGACTGCTGTCGGCCAGCCGGTATTGCTGGGTAATTCCCCCCTG
ATGCTGCAGACCCGCCAGATGATAGCCAAGCTGGCGCGCAGCCAGGCGCCGATTCATATTTCCGGGGAATCGGGTAGCGG
CAAGGAACTGGCGGCACGGTTGCTCCATCTTGATGGCCCGCGTGGCGATGCGCCCTTCGTCGCAGTCAATTGCGGGGCGA
TTCCCGAAAACCTGATGGAAAGCGAGTTTTTCGGTTACAAGAAAGGCGCCTTCACCGGGGCCAATCAGGACAAGGAGGGT
TTTTTTCAGGCTGCAGCCGGCGGAACACTGTTTCTGGATGAAGTGGCGGACCTGCCCTTGCCGATGCAGGTGAAGCTGTT
GCGCGTCATCCAGGAAAAAATGGTGCGCAAGGTGGGTGCCACCCAGGAAGAACCCGTGGATGTGCGCATCATAAGTGCCA
CTCACCAGGATCTGACGCTATGCGTGGAAAGTGGAAAATTTCGCCAGGACTTGTTTTACCGGCTCAACGTGATCGTGTTG
AAGATGCCGGCTTTGCGCGAGATCCCTGACGATATCCCGCTGCTGGCCGGGGAGATGCTCAAGAAAATGGCGGGTCTGAA
CACCGAGCCGCCGAAATTGAGCCTGGCAGCGTTGAAGGATCTGCAAGAGTACGATTTCCCCGGCAATGTACGCGAAATGG
AAAACATCCTCGAGCGGGCGATGGCGCTAACTACGGGTGGTGAGATATGTCCCGAGGATTTGCAACTCGCGGCGAAGCAG
CCAAAGGACATGGCACAGATGAAAAGCTTGCCGTTACAGGAATATCTCGACGCCGTGGAAAAAGAGGCGATTCTGGAAGC
GCTGGAAAAAACCCGTTTCAACAAGACCGCGGCAGCCAAGCTGCTTGGCATCACCTTTCGGGCGTTGCGTTACCGACTGG
AACGACTGGGGATGGATTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(155-320)

Bacterial regulatory protein, Fis family (HTH_8)

(416-455)

Response regulator receiver domain (Response_reg)

(18-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S6B5V4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.793

97.821

0.556
  pilR Acinetobacter baumannii strain A118

47.346

100

0.486

Multiple sequence alignment