Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   LK420_RS08225 Genome accession   NZ_CP085949
Coordinates   1697668..1698081 (-) Length   137 a.a.
NCBI ID   WP_021034381.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1562     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1692668..1703081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK420_RS08195 (LK420_08195) - 1692771..1693361 (-) 591 WP_021034387.1 YjaG family protein -
  LK420_RS08200 (LK420_08200) nudC 1693397..1694191 (-) 795 WP_021034386.1 NAD(+) diphosphatase -
  LK420_RS08205 (LK420_08205) nfuA 1694259..1694855 (-) 597 WP_021034385.1 Fe-S biogenesis protein NfuA -
  LK420_RS08210 (LK420_08210) - 1694931..1695617 (-) 687 WP_021034384.1 ComF family protein -
  LK420_RS08215 (LK420_08215) tnpA 1695865..1696318 (-) 454 Protein_1574 IS200/IS605 family transposase -
  LK420_RS08220 (LK420_08220) comE 1696315..1697658 (-) 1344 WP_021034382.1 type IV pilus secretin PilQ Machinery gene
  LK420_RS08225 (LK420_08225) comD 1697668..1698081 (-) 414 WP_021034381.1 pilus assembly protein PilP Machinery gene
  LK420_RS08230 (LK420_08230) comC 1698078..1698599 (-) 522 WP_021034380.1 hypothetical protein Machinery gene
  LK420_RS08235 (LK420_08235) comB 1698596..1699102 (-) 507 WP_021034379.1 hypothetical protein Machinery gene
  LK420_RS08240 (LK420_08240) comA 1699103..1699900 (-) 798 WP_021034378.1 pilus assembly protein PilM Machinery gene
  LK420_RS08245 (LK420_08245) - 1699999..1702599 (+) 2601 WP_021034377.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15658.77 Da        Isoelectric Point: 4.3509

>NTDB_id=621521 LK420_RS08225 WP_021034381.1 1697668..1698081(-) (comD) [Haemophilus influenzae strain FDAARGOS_1562]
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLLDQNLQIYSVLEGVDVAQEGYIVEKIDQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=621521 LK420_RS08225 WP_021034381.1 1697668..1698081(-) (comD) [Haemophilus influenzae strain FDAARGOS_1562]
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTCGATAAAACACAACG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCCTTGAATGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCGTTTGCGTTATTGCTGGATCAGAATTTGCAAATTTACAGTGTTTTAGAGGGTGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCGACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae 86-028NP

94.161

100

0.942
  comD Haemophilus influenzae Rd KW20

93.431

100

0.934