Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   LK420_RS05570 Genome accession   NZ_CP085949
Coordinates   1173152..1173871 (-) Length   239 a.a.
NCBI ID   WP_021034776.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1562     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1168152..1178871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK420_RS05550 (LK420_05550) nrdR 1168262..1168711 (-) 450 WP_021034780.1 transcriptional regulator NrdR -
  LK420_RS05555 (LK420_05555) recC 1168766..1172146 (-) 3381 WP_021034779.1 exodeoxyribonuclease V subunit gamma -
  LK420_RS05560 (LK420_05560) comQ 1172192..1172479 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  LK420_RS05565 (LK420_05565) comP 1172472..1173155 (-) 684 WP_021034777.1 DUF2572 family protein Machinery gene
  LK420_RS05570 (LK420_05570) comO 1173152..1173871 (-) 720 WP_021034776.1 PulJ/GspJ family protein Machinery gene
  LK420_RS05575 (LK420_05575) comN 1173871..1174383 (-) 513 WP_041175282.1 pilus assembly FimT family protein Machinery gene
  LK420_RS05580 (LK420_05580) suhB 1174583..1175386 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  LK420_RS05585 (LK420_05585) nrfE 1175496..1177403 (+) 1908 WP_021034774.1 heme lyase NrfEFG subunit NrfE -
  LK420_RS05590 (LK420_05590) - 1177403..1177933 (+) 531 WP_021034773.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26792.10 Da        Isoelectric Point: 9.3691

>NTDB_id=621508 LK420_RS05570 WP_021034776.1 1173152..1173871(-) (comO) [Haemophilus influenzae strain FDAARGOS_1562]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKNGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITKLQFNWLIEGKGLEIKLKGNLKQAPNISYETSLVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=621508 LK420_RS05570 WP_021034776.1 1173152..1173871(-) (comO) [Haemophilus influenzae strain FDAARGOS_1562]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAACCAACAAATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCCATTTTCATTAGCCAAGAAGATAACGCCCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAATGGGAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAAGCTACAATTTAATTGGTTAATCGAAGGAAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAGCTCCAAATATTAGTTATGAAACATCCCTTGTCGTTGCTCTCTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

97.059

99.582

0.967