Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   LK420_RS05575 Genome accession   NZ_CP085949
Coordinates   1173871..1174383 (-) Length   170 a.a.
NCBI ID   WP_041175282.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1562     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1168871..1179383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK420_RS05560 (LK420_05560) comQ 1172192..1172479 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  LK420_RS05565 (LK420_05565) comP 1172472..1173155 (-) 684 WP_021034777.1 DUF2572 family protein Machinery gene
  LK420_RS05570 (LK420_05570) comO 1173152..1173871 (-) 720 WP_021034776.1 PulJ/GspJ family protein Machinery gene
  LK420_RS05575 (LK420_05575) comN 1173871..1174383 (-) 513 WP_041175282.1 pilus assembly FimT family protein Machinery gene
  LK420_RS05580 (LK420_05580) suhB 1174583..1175386 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  LK420_RS05585 (LK420_05585) nrfE 1175496..1177403 (+) 1908 WP_021034774.1 heme lyase NrfEFG subunit NrfE -
  LK420_RS05590 (LK420_05590) - 1177403..1177933 (+) 531 WP_021034773.1 DsbE family thiol:disulfide interchange protein -
  LK420_RS05595 (LK420_05595) nrfF 1177930..1179072 (+) 1143 WP_021034772.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19930.25 Da        Isoelectric Point: 8.7160

>NTDB_id=621509 LK420_RS05575 WP_041175282.1 1173871..1174383(-) (comN) [Haemophilus influenzae strain FDAARGOS_1562]
MQKGMTLVELLIGLAIISIVLSFVVPLWQTDLPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHYIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=621509 LK420_RS05575 WP_041175282.1 1173871..1174383(-) (comN) [Haemophilus influenzae strain FDAARGOS_1562]
ATGCAGAAAGGTATGACATTAGTGGAATTATTAATTGGGTTAGCCATTATCAGCATTGTGCTGAGTTTTGTCGTGCCATT
ATGGCAAACCGATTTACCTAAAACGATTTTAGCTAAAGAGCAACATCGCCTGTATTTATTTCTACGACAAATTCAGGCTC
GTGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCACATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATTATATTTATCCGAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGTTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGTAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

95.882

100

0.959