Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   LK420_RS05565 Genome accession   NZ_CP085949
Coordinates   1172472..1173155 (-) Length   227 a.a.
NCBI ID   WP_021034777.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1562     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1167472..1178155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK420_RS05550 (LK420_05550) nrdR 1168262..1168711 (-) 450 WP_021034780.1 transcriptional regulator NrdR -
  LK420_RS05555 (LK420_05555) recC 1168766..1172146 (-) 3381 WP_021034779.1 exodeoxyribonuclease V subunit gamma -
  LK420_RS05560 (LK420_05560) comQ 1172192..1172479 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  LK420_RS05565 (LK420_05565) comP 1172472..1173155 (-) 684 WP_021034777.1 DUF2572 family protein Machinery gene
  LK420_RS05570 (LK420_05570) comO 1173152..1173871 (-) 720 WP_021034776.1 PulJ/GspJ family protein Machinery gene
  LK420_RS05575 (LK420_05575) comN 1173871..1174383 (-) 513 WP_041175282.1 pilus assembly FimT family protein Machinery gene
  LK420_RS05580 (LK420_05580) suhB 1174583..1175386 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  LK420_RS05585 (LK420_05585) nrfE 1175496..1177403 (+) 1908 WP_021034774.1 heme lyase NrfEFG subunit NrfE -
  LK420_RS05590 (LK420_05590) - 1177403..1177933 (+) 531 WP_021034773.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25455.33 Da        Isoelectric Point: 9.5163

>NTDB_id=621507 LK420_RS05565 WP_021034777.1 1172472..1173155(-) (comP) [Haemophilus influenzae strain FDAARGOS_1562]
MTIQKGIITLTILIFISGLLSVILLLDDSHLSFFRAQQNQRKHYVERTLQLQRITALKKQTACLDLPLNNNESVKQISIT
LDGATDSIQYFLWCERMSLFKKSPKQGDNQGALKDFVSGEKLAYFRPHFSSPPKILNANKTPKLYWFSDSQAEVEINGTV
SAVLIAESDLKLTGKGRIIGAVITNGNLTLDGVTLAYGKKTVVALVQQYSQWKLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=621507 LK420_RS05565 WP_021034777.1 1172472..1173155(-) (comP) [Haemophilus influenzae strain FDAARGOS_1562]
ATGACAATACAAAAAGGCATTATTACGCTGACTATTCTGATTTTTATTTCAGGCTTATTAAGCGTAATCTTATTGTTAGA
TGACAGCCATTTAAGTTTTTTTCGGGCACAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAATTACAAAGAA
TAACAGCCTTGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATAATGAAAGTGTAAAGCAAATCAGCATTACG
CTTGATGGTGCCACAGATTCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAACAGGG
AGATAATCAAGGCGCATTGAAAGATTTTGTGAGTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCTCCTA
AAATTTTAAATGCGAATAAAACGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAAGTTGAAATTAATGGCACGGTG
TCTGCCGTATTAATTGCAGAGAGCGATTTAAAATTGACTGGCAAAGGGAGGATTATTGGCGCAGTGATTACCAACGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGAAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

91.63

100

0.916