Detailed information NTG0621297

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: LK454_RS06595
• Genome accession: NZ_CP085923
• Coordinates: 1353897..1354892 (+)
• Length: 331 a.a.
• NCBI ID: WP_001864273.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain FDAARGOS_1601
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1348897..1359892

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LK454_RS06565 (LK454_06565)	panD	1350322..1350672 (+)	351	WP_000142228.1	aspartate 1-decarboxylase	-
LK454_RS06570 (LK454_06570)	-	1350683..1350976 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
LK454_RS06575 (LK454_06575)	-	1350976..1351971 (+)	996	WP_000468494.1	PDZ domain-containing protein	-
LK454_RS06580 (LK454_06580)	comB6	1351979..1353034 (+)	1056	WP_000786653.1	P-type conjugative transfer protein TrbL	Machinery gene
LK454_RS06585 (LK454_06585)	comB7	1353050..1353163 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
LK454_RS06590 (LK454_06590)	comB8	1353160..1353897 (+)	738	WP_001208410.1	virB8 family protein	Machinery gene
LK454_RS06595 (LK454_06595)	comB9	1353897..1354892 (+)	996	WP_001864273.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
LK454_RS06600 (LK454_06600)	comB10	1354885..1356015 (+)	1131	WP_001045886.1	DNA type IV secretion system protein ComB10	Machinery gene
LK454_RS06605 (LK454_06605)	-	1356085..1357512 (+)	1428	WP_000694864.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
LK454_RS06610 (LK454_06610)	gmd	1357512..1358657 (+)	1146	WP_000659812.1	GDP-mannose 4,6-dehydratase	-
LK454_RS06615 (LK454_06615)	-	1358650..1359582 (+)	933	WP_001002497.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 38110.02 Da
• Isoelectric Point: 9.6248

>NTDB_id=621297 LK454_RS06595 WP_001864273.1 1353897..1354892(+) (comB9) [Helicobacter pylori strain FDAARGOS_1601]
MRKVLYALMGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQNKENMAENAPKDAPINNKPLKEEPLKEKKEETKEKEEETITIGDNTNAMKIIKKDIQKGYKALKSSQRKW
YCLGICSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYL
CIRFVKKAKDE

Nucleotide

• Length: 996 bp

>NTDB_id=621297 LK454_RS06595 WP_001864273.1 1353897..1354892(+) (comB9) [Helicobacter pylori strain FDAARGOS_1601]
ATGCGTAAGGTTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATATTAGAAAG
TAACGATCGCATTTTACTCATCAAACCCTTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAGTGAGGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAAGATAAAAAT
TATTATTCTAACGCTTTTTTGAAGCCCCAAAATAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCCATAAACAA
CAAGCCCTTAAAAGAAGAACCCTTAAAAGAGAAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCG
ATAACACCAACGCAATGAAAATTATTAAAAAAGACATTCAAAAAGGTTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGG
TATTGTTTAGGGATTTGTTCTAAAAAGTCCAAACTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTA
TTTCAAATTTGATAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGA
ATACAAGGATTGTAGGCGATTACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGCTGGGCAAGGACTATTTG
TGTATCCGTTTTGTCAAAAAGGCTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-322)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	95.77	100	0.958