Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | LK454_RS06585 | Genome accession | NZ_CP085923 |
| Coordinates | 1353050..1353163 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori strain FDAARGOS_1601 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1348050..1358163
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LK454_RS06560 (LK454_06560) | - | 1348107..1350332 (+) | 2226 | WP_001051484.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| LK454_RS06565 (LK454_06565) | panD | 1350322..1350672 (+) | 351 | WP_000142228.1 | aspartate 1-decarboxylase | - |
| LK454_RS06570 (LK454_06570) | - | 1350683..1350976 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| LK454_RS06575 (LK454_06575) | - | 1350976..1351971 (+) | 996 | WP_000468494.1 | PDZ domain-containing protein | - |
| LK454_RS06580 (LK454_06580) | comB6 | 1351979..1353034 (+) | 1056 | WP_000786653.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| LK454_RS06585 (LK454_06585) | comB7 | 1353050..1353163 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| LK454_RS06590 (LK454_06590) | comB8 | 1353160..1353897 (+) | 738 | WP_001208410.1 | virB8 family protein | Machinery gene |
| LK454_RS06595 (LK454_06595) | comB9 | 1353897..1354892 (+) | 996 | WP_001864273.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| LK454_RS06600 (LK454_06600) | comB10 | 1354885..1356015 (+) | 1131 | WP_001045886.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| LK454_RS06605 (LK454_06605) | - | 1356085..1357512 (+) | 1428 | WP_000694864.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=621295 LK454_RS06585 WP_001217873.1 1353050..1353163(+) (comB7) [Helicobacter pylori strain FDAARGOS_1601]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=621295 LK454_RS06585 WP_001217873.1 1353050..1353163(+) (comB7) [Helicobacter pylori strain FDAARGOS_1601]
ATGAGGATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGGATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |