Detailed information NTG0621294

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: LK454_RS06580
• Genome accession: NZ_CP085923
• Coordinates: 1351979..1353034 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786653.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain FDAARGOS_1601
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1346979..1358034

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LK454_RS06550 (LK454_06550)	-	1347388..1347801 (+)	414	WP_001023008.1	universal stress protein	-
LK454_RS06555 (LK454_06555)	-	1347832..1348107 (+)	276	WP_000784904.1	ATP-dependent Clp protease adaptor ClpS	-
LK454_RS06560 (LK454_06560)	-	1348107..1350332 (+)	2226	WP_001051484.1	ATP-dependent Clp protease ATP-binding subunit	-
LK454_RS06565 (LK454_06565)	panD	1350322..1350672 (+)	351	WP_000142228.1	aspartate 1-decarboxylase	-
LK454_RS06570 (LK454_06570)	-	1350683..1350976 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
LK454_RS06575 (LK454_06575)	-	1350976..1351971 (+)	996	WP_000468494.1	PDZ domain-containing protein	-
LK454_RS06580 (LK454_06580)	comB6	1351979..1353034 (+)	1056	WP_000786653.1	P-type conjugative transfer protein TrbL	Machinery gene
LK454_RS06585 (LK454_06585)	comB7	1353050..1353163 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
LK454_RS06590 (LK454_06590)	comB8	1353160..1353897 (+)	738	WP_001208410.1	virB8 family protein	Machinery gene
LK454_RS06595 (LK454_06595)	comB9	1353897..1354892 (+)	996	WP_001864273.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
LK454_RS06600 (LK454_06600)	comB10	1354885..1356015 (+)	1131	WP_001045886.1	DNA type IV secretion system protein ComB10	Machinery gene
LK454_RS06605 (LK454_06605)	-	1356085..1357512 (+)	1428	WP_000694864.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39637.62 Da
• Isoelectric Point: 9.0406

>NTDB_id=621294 LK454_RS06580 WP_000786653.1 1351979..1353034(+) (comB6) [Helicobacter pylori strain FDAARGOS_1601]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVIICLKKCFALGFYKSFLLLVGFLNVSVTKALIDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=621294 LK454_RS06580 WP_000786653.1 1351979..1353034(+) (comB6) [Helicobacter pylori strain FDAARGOS_1601]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTTTTCAGCGCTAGCGCGCTTTTAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAATTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGACTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGTATTTTGCAAGCGCTTTTTTTGAGCGTTTTG
TTTGCAATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTAATTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGTCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTCAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96