Detailed information NTG0621136

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LIS66_RS22865
• Genome accession: NZ_CP085885
• Coordinates: 5162525..5163871 (+)
• Length: 448 a.a.
• NCBI ID: WP_227973091.1
• Uniprot ID: -
• Organism: Pseudomonas sp. HN2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5157525..5168871

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIS66_RS22840 (LIS66_22840)	pgeF	5157740..5158462 (-)	723	WP_227973090.1	peptidoglycan editing factor PgeF	-
LIS66_RS22845 (LIS66_22845)	rluD	5158459..5159421 (-)	963	WP_042610487.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LIS66_RS22850 (LIS66_22850)	-	5159573..5160589 (+)	1017	WP_064364119.1	outer membrane protein assembly factor BamD	-
LIS66_RS22855 (LIS66_22855)	-	5160716..5160949 (+)	234	WP_039761661.1	PP0621 family protein	-
LIS66_RS22860 (LIS66_22860)	pilS	5160939..5162528 (+)	1590	WP_042610490.1	sensor histidine kinase	Regulator
LIS66_RS22865 (LIS66_22865)	pilR	5162525..5163871 (+)	1347	WP_227973091.1	sigma-54-dependent transcriptional regulator	Regulator
LIS66_RS22870 (LIS66_22870)	thiO	5163965..5165065 (-)	1101	WP_227973092.1	glycine oxidase ThiO	-
LIS66_RS22875 (LIS66_22875)	-	5165123..5165524 (-)	402	WP_227973093.1	type IV pilin protein	-
LIS66_RS22880 (LIS66_22880)	-	5165540..5168629 (-)	3090	WP_227973094.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50080.38 Da
• Isoelectric Point: 6.3595

>NTDB_id=621136 LIS66_RS22865 WP_227973091.1 5162525..5163871(+) (pilR) [Pseudomonas sp. HN2]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRAPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRIPTAGGLSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAQDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCEQRTIEAQDLRLSEGNCAADGATADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=621136 LIS66_RS22865 WP_227973091.1 5162525..5163871(+) (pilR) [Pseudomonas sp. HN2]
TTGAATACAAGCCCACGGCAAAAAATTCTTATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAACCTGGGCGAGGCTCAGGCGCTGTTACAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATCCAGCAGCGCGCTCCGCATCTGCCG
GTAGCGATGATCACCGCGTACGGAAGCCTGGAAACGGCTATCAATGCGCTGAAGGCCGGCGCGTTCGATTTCCTCACCAA
ACCAGTGGAGCTGCCGCGACTGCGCGAGCTGGTCAGCTCGGCGCTGCGCATTCCGACAGCCGGTGGCCTGAGTACGGCAA
TCGAGCGACGCTTGCTGGGCGACTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCGCGCAGCCAGGCG
CCGGTGTACATCAGCGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCACGCCTGATTCACGAACAAGGCCCGCGCGCGAG
CCAGCCCTTTGTGCCGGTGAACTGCGGGGCGATTCCGTCGGAGCTGATGGAAAGCGAATTCTTCGGCCACCGCAAAGGCA
GTTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTGTTCCAGGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTTGCC
GATCTGCCACTGCCGATGCAGGTGAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTGCGCATCCTGTGTGCCACACACAAAGACCTTGAAGCCGAAGTCGCGGCCGAGCGCTTCCGTCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGCGTGCCTTCCCTGCGTGAACGTCGCGACGACATCGAGGCGCTCGCC
ATGCATGTGCTCAAGCGCTTGGCCCAGGACACCGGACAACCCGAAGCGCGCCTGCATCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAACGTGCGCGAACTGGAGAATGTCCTCGAACGCGCGCACACTTTGTGTGAACAGCGCACGA
TCGAAGCGCAGGATCTGCGTTTAAGCGAAGGCAATTGCGCCGCGGATGGGGCGACGGCTGATCTGACGCAGATCGACAAT
CTCGAGGATTATCTGGAGAGCGTCGAGCGCAAACTCATTCTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGTTATCGGCTGAAGAAGTTGGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.33	98.884	0.775
pilR	Acinetobacter baumannii strain A118	49.02	100	0.502