Detailed information NTG0621129

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LIS66_RS19415
• Genome accession: NZ_CP085885
• Coordinates: 4396270..4398504 (-)
• Length: 744 a.a.
• NCBI ID: WP_227972843.1
• Uniprot ID: -
• Organism: Pseudomonas sp. HN2
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4391270..4403504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIS66_RS19380 (LIS66_19380)	murB	4391647..4392666 (-)	1020	WP_227972839.1	UDP-N-acetylmuramate dehydrogenase	-
LIS66_RS19385 (LIS66_19385)	-	4392663..4393127 (-)	465	WP_227972840.1	low molecular weight protein-tyrosine-phosphatase	-
LIS66_RS19390 (LIS66_19390)	kdsB	4393127..4393891 (-)	765	WP_227972841.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LIS66_RS19395 (LIS66_19395)	-	4393888..4394073 (-)	186	WP_003179363.1	Trm112 family protein	-
LIS66_RS19400 (LIS66_19400)	lpxK	4394098..4395108 (-)	1011	WP_227972842.1	tetraacyldisaccharide 4'-kinase	-
LIS66_RS19405 (LIS66_19405)	-	4395108..4395536 (-)	429	WP_042610688.1	ExbD/TolR family protein	-
LIS66_RS19410 (LIS66_19410)	exbB	4395533..4396168 (-)	636	WP_007908216.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LIS66_RS19415 (LIS66_19415)	comA	4396270..4398504 (-)	2235	WP_227972843.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LIS66_RS19420 (LIS66_19420)	-	4398641..4399159 (+)	519	WP_042610686.1	DUF2062 domain-containing protein	-
LIS66_RS19425 (LIS66_19425)	-	4399298..4400077 (-)	780	WP_039760202.1	ABC transporter permease	-
LIS66_RS19430 (LIS66_19430)	-	4400074..4401006 (-)	933	WP_227972844.1	ABC transporter ATP-binding protein	-
LIS66_RS19435 (LIS66_19435)	-	4401140..4401763 (-)	624	WP_227972845.1	glutathione S-transferase family protein	-
LIS66_RS19440 (LIS66_19440)	-	4401807..4402466 (-)	660	WP_064361446.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81978.20 Da
• Isoelectric Point: 9.7348

>NTDB_id=621129 LIS66_RS19415 WP_227972843.1 4396270..4398504(-) (comA) [Pseudomonas sp. HN2]
MRTGMMALAVGLLAPVFLPALPPVGWWVVLPVVALMLLPFRSYPLAFLLFGFTWVCVGAQMALNDRLPPPLDGETRWLEG
RVVGLPQHGDGVVRFELADARSRHEKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEARYAWRDSVRQRLLAVDAQGREGALAALVLGDGSGLSREYWQVLQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLSRYGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWRPLLLAFNGVLLFDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLFAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPLWALVLGSLGALLLLLPRGVPLRPLGWPLMLLLI
LPPRERIEEGRADVWQLDVGQGLAILVRTRHHALLYDAGPRFGEFDLGERVVLPALRKLNLQTLDLMLLSHADADHAGGA
GAVMRGLNVHRIVSGDPPNLPPELSAEACANGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDIHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIHLQL
GSFKPPWTMRHQRRFWREPPAPGR

Nucleotide

• Length: 2235 bp

>NTDB_id=621129 LIS66_RS19415 WP_227972843.1 4396270..4398504(-) (comA) [Pseudomonas sp. HN2]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTTGGTG
GGTGGTACTGCCGGTGGTGGCGCTGATGCTCCTACCGTTTCGCAGCTATCCACTGGCATTTTTGTTGTTTGGCTTCACAT
GGGTCTGCGTCGGCGCGCAGATGGCTCTGAATGACCGCTTGCCGCCGCCACTGGACGGCGAAACCCGTTGGCTCGAGGGG
CGTGTGGTCGGCTTGCCGCAGCACGGCGACGGTGTGGTGCGTTTCGAACTGGCTGACGCCCGCTCGCGCCACGAAAAGCT
GCCATCGCTGATGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAACGCTGGCGTCTGGCGGTGAAGTTGA
AGCGCCCGGGTGGCTTGCTCAACCCGGACGCCTTCGATTACGAGGCCTGGCTGCTCGCCCAGCGCATCGGTGCGACCGGT
ACGATCAAAGATGGCCAGCGTCTGGCTGAGGCCCGGTACGCCTGGCGCGACAGCGTTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGGCGAGAGGGCGCGTTGGCGGCGCTGGTGCTCGGCGACGGTTCGGGTCTGAGTCGCGAGTACTGGCAGGTAC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATTTCCGGCCAGCACATCGGTTTGCTCGCCGCGGTGATGTATCTGCTG
GTCGCCGGGCTTTCGCGATACGGTTTGTGGCCGTTGCGCTGGCCATGGCTGCCCTGGGCATGCGGCCTGGCCTTCGCGGC
GGCGCTGGGTTATGGCTTGCTCGCCGGTTTCGATGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTGCTGTTGT
GGCGCCTGCGTTTTCGCCATCTCGGTGCGTGGAGGCCGTTGTTGCTGGCGTTCAACGGCGTGCTGCTGTTTGATCCGTTG
GCCAGTTTGCGTCCCGGGTTCTGGCTGTCTTTCGCGGCGGTGGCCGTACTGATTTTCACCTTCGGCGGGCGGCTGGGCGC
TTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATTGGCTTGTGTCCGGTGTTGCTGGCGCTCAGCC
TGCCGATCAGCGTCAGTGGCCCCGTGGCGAATCTGTTTGCGGTGCCGTGGGTCAGTCTTGTGGTATTGCCGCCGGCGTTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGGTTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGACTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCCGCCGCCATTCCATTGTGGGCGCTGGTCTTGGGCA
GCCTCGGCGCCTTGTTATTGCTGTTGCCCCGTGGTGTGCCGCTACGTCCATTGGGCTGGCCGTTGATGTTGCTGCTGATA
TTGCCGCCGCGAGAGCGAATAGAAGAGGGGCGGGCCGATGTCTGGCAACTCGACGTCGGCCAAGGCCTGGCCATCCTCGT
GCGCACCCGCCATCACGCGTTGCTCTATGACGCCGGGCCGCGTTTCGGCGAGTTCGATCTCGGCGAGCGGGTGGTGCTGC
CAGCGCTGCGCAAACTCAATCTGCAAACGCTCGACCTGATGCTGCTCAGCCATGCCGACGCCGATCACGCTGGCGGCGCC
GGGGCGGTGATGCGTGGATTGAACGTGCACCGCATCGTCAGTGGCGACCCGCCAAACCTGCCGCCGGAGTTGAGCGCCGA
AGCCTGCGCAAATGGCGAACAGTGGCAATGGGATGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGCGGCCGATGACAGCA
ACCAGCGCTCCTGTGTCTTGCAGATCGAAGCCAACGGCGAGCGCCTGCTGCTCACCGGCGACATCGACATTCACGCCGAG
CGCGTTCTGCTCGACAGTCCACTGGCGGTGCCGACGCAATGGCTGCAATCGCCGCATCACGGCAGTCGCAGCTCATCGTC
GATGGCCCTGCTCAAAGCCTTGCAGCCAGAAGCGGTGCTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCACCCGCATC
CGACCGTGCTTGCGCGCTACCGCAAGCAAGGCCTGCGCATCTATGACAGCGCCGAGCAGGGCGCCATCCATCTGCAACTG
GGCAGCTTCAAACCGCCGTGGACGATGCGTCACCAGCGGCGCTTCTGGCGCGAGCCGCCGGCGCCTGGCCGTTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.587	96.64	0.605
comA	Ralstonia pseudosolanacearum GMI1000	34.961	100	0.366