Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LIS66_RS19410 Genome accession   NZ_CP085885
Coordinates   4395533..4396168 (-) Length   211 a.a.
NCBI ID   WP_007908216.1    Uniprot ID   J2QQ31
Organism   Pseudomonas sp. HN2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4390533..4401168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS66_RS19375 (LIS66_19375) - 4390926..4391396 (-) 471 WP_041479453.1 (2Fe-2S)-binding protein -
  LIS66_RS19380 (LIS66_19380) murB 4391647..4392666 (-) 1020 WP_227972839.1 UDP-N-acetylmuramate dehydrogenase -
  LIS66_RS19385 (LIS66_19385) - 4392663..4393127 (-) 465 WP_227972840.1 low molecular weight protein-tyrosine-phosphatase -
  LIS66_RS19390 (LIS66_19390) kdsB 4393127..4393891 (-) 765 WP_227972841.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LIS66_RS19395 (LIS66_19395) - 4393888..4394073 (-) 186 WP_003179363.1 Trm112 family protein -
  LIS66_RS19400 (LIS66_19400) lpxK 4394098..4395108 (-) 1011 WP_227972842.1 tetraacyldisaccharide 4'-kinase -
  LIS66_RS19405 (LIS66_19405) - 4395108..4395536 (-) 429 WP_042610688.1 ExbD/TolR family protein -
  LIS66_RS19410 (LIS66_19410) exbB 4395533..4396168 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LIS66_RS19415 (LIS66_19415) comA 4396270..4398504 (-) 2235 WP_227972843.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LIS66_RS19420 (LIS66_19420) - 4398641..4399159 (+) 519 WP_042610686.1 DUF2062 domain-containing protein -
  LIS66_RS19425 (LIS66_19425) - 4399298..4400077 (-) 780 WP_039760202.1 ABC transporter permease -
  LIS66_RS19430 (LIS66_19430) - 4400074..4401006 (-) 933 WP_227972844.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.04 Da        Isoelectric Point: 6.8771

>NTDB_id=621128 LIS66_RS19410 WP_007908216.1 4395533..4396168(-) (exbB) [Pseudomonas sp. HN2]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=621128 LIS66_RS19410 WP_007908216.1 4395533..4396168(-) (exbB) [Pseudomonas sp. HN2]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCGGCCATGGCGATCGTTGC
CGAACGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCGGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAGGCCGCCGCGCGGGTGATTCATGAGCTCGAACGCTACGT
CAACGCGTTGGGCACCATCGCCGCGATGTCGCCGTTGCTCGGTCTGCTCGGCACTGTGCTCGGCATGATCGACATTTTCA
GTGCCTTCACCGGTTCCGGCATGACCACCAATGCATCGGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGTATCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2QQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848