Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   HP399_RS15175 Genome accession   NZ_CP085876
Coordinates   3242102..3242815 (-) Length   237 a.a.
NCBI ID   WP_173619401.1    Uniprot ID   -
Organism   Brevibacillus sp. DP1.3A     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3237102..3247815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP399_RS15150 (HP399_015170) tenA 3237396..3238076 (+) 681 WP_173619405.1 thiaminase II -
  HP399_RS15155 (HP399_015175) - 3238061..3238843 (+) 783 WP_173619404.1 ABC transporter ATP-binding protein -
  HP399_RS15160 (HP399_015180) - 3238843..3239601 (+) 759 WP_173619597.1 ABC transporter permease -
  HP399_RS15165 (HP399_015185) - 3239598..3240629 (+) 1032 WP_173619403.1 ABC transporter substrate-binding protein -
  HP399_RS15170 (HP399_015190) - 3240719..3242101 (-) 1383 WP_173619402.1 sensor histidine kinase KdpD -
  HP399_RS15175 (HP399_015195) scnR 3242102..3242815 (-) 714 WP_173619401.1 response regulator transcription factor Regulator
  HP399_RS15180 (HP399_015200) - 3242968..3243879 (+) 912 WP_173619400.1 ABC transporter ATP-binding protein -
  HP399_RS15185 (HP399_015205) - 3243879..3244628 (+) 750 WP_173619399.1 ABC transporter permease -
  HP399_RS15190 (HP399_015210) - 3244641..3245372 (+) 732 WP_173619398.1 ABC transporter permease -
  HP399_RS15195 (HP399_015215) - 3245635..3246177 (-) 543 WP_173619397.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27156.55 Da        Isoelectric Point: 5.2292

>NTDB_id=621062 HP399_RS15175 WP_173619401.1 3242102..3242815(-) (scnR) [Brevibacillus sp. DP1.3A]
MEEWKQKKVLLVEDELEIRNMIDGFLRKEGFSRIFHAGSCKEALVICTSDKPDVAILDVMLPDGDGFGLLTSIRRFSQIP
VIFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLLVILRRVYAPPQIDRLPVFQLGDSTIDLEAAIVTRDHYEYAL
TAKEHALLRKLYENRGRIVTSDALCQSVWGDDYYGYENTLMVHMRRIREKIEPCPSAPEYLLTVRGLGYKLLVKEEL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=621062 HP399_RS15175 WP_173619401.1 3242102..3242815(-) (scnR) [Brevibacillus sp. DP1.3A]
ATGGAAGAGTGGAAACAGAAAAAAGTGCTCCTCGTGGAAGATGAGCTTGAAATCAGAAATATGATCGATGGATTTTTGCG
TAAGGAAGGATTCTCTCGTATTTTTCATGCGGGTAGTTGTAAAGAGGCGTTAGTGATATGCACTTCGGACAAGCCAGATG
TGGCGATTCTGGATGTCATGCTGCCTGATGGAGATGGATTTGGACTTTTGACTTCGATCCGTCGTTTCTCGCAAATCCCT
GTCATTTTTCTGTCAGCGAGAGGCGAAGATGAGGATCGATTGCTCGGACTTGGCCTAGGCGCTGACGACTATATCGTGAA
GCCATTTTTGCCGCGCGAACTCGTTCTTCGTCTCCTGGTCATTTTACGACGCGTTTACGCTCCTCCCCAAATTGATCGTC
TGCCGGTTTTCCAGCTTGGTGACAGTACGATCGATTTGGAGGCGGCAATCGTGACGAGAGATCACTACGAATACGCTTTG
ACCGCCAAGGAACACGCGCTCTTGCGAAAACTCTATGAAAATCGGGGACGAATCGTCACGAGTGATGCCCTGTGCCAATC
TGTATGGGGTGACGATTACTACGGGTATGAAAACACGCTGATGGTTCATATGCGTCGCATTCGCGAAAAGATCGAGCCAT
GTCCGTCCGCTCCTGAATATTTGCTGACGGTAAGAGGACTCGGATACAAATTACTTGTAAAGGAAGAGCTGTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(157-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.435

97.046

0.489
  micA Streptococcus pneumoniae Cp1015

41.667

96.203

0.401
  vicR Streptococcus mutans UA159

41.048

96.624

0.397