Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   HP435_RS25420 Genome accession   NZ_CP085874
Coordinates   5438063..5438773 (+) Length   236 a.a.
NCBI ID   WP_122963710.1    Uniprot ID   -
Organism   Brevibacillus sp. HD3.3A     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5433063..5443773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP435_RS25390 (HP435_25450) - 5433322..5433897 (+) 576 WP_173599411.1 RDD family protein -
  HP435_RS25395 (HP435_25455) - 5434033..5434467 (+) 435 WP_173599412.1 hypothetical protein -
  HP435_RS25400 (HP435_25460) - 5434578..5435411 (-) 834 WP_122963714.1 alpha/beta fold hydrolase -
  HP435_RS25405 (HP435_25465) - 5435500..5436231 (-) 732 WP_173597687.1 ABC transporter permease -
  HP435_RS25410 (HP435_25470) - 5436243..5437001 (-) 759 WP_173597688.1 ABC transporter permease -
  HP435_RS25415 (HP435_25475) - 5436998..5437909 (-) 912 WP_173599413.1 ABC transporter ATP-binding protein -
  HP435_RS25420 (HP435_25480) scnR 5438063..5438773 (+) 711 WP_122963710.1 response regulator transcription factor Regulator
  HP435_RS25425 (HP435_25485) - 5438776..5440179 (+) 1404 WP_173599414.1 sensor histidine kinase KdpD -
  HP435_RS25430 (HP435_25490) - 5440359..5440952 (-) 594 WP_173599415.1 YdeI family protein -
  HP435_RS25435 (HP435_25495) - 5441241..5441660 (-) 420 WP_173599416.1 SRPBCC domain-containing protein -
  HP435_RS25440 (HP435_25500) - 5441657..5441998 (-) 342 WP_173599417.1 helix-turn-helix transcriptional regulator -
  HP435_RS29355 - 5442413..5442565 (-) 153 WP_338076110.1 hypothetical protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27080.45 Da        Isoelectric Point: 6.3896

>NTDB_id=621032 HP435_RS25420 WP_122963710.1 5438063..5438773(+) (scnR) [Brevibacillus sp. HD3.3A]
MDELKQKKLLIVDDEPEIRKMIEHFLRKEGFMRIYQAGDCREALELCRSIQPDLAILDVMLPDGDGFSLLQAIRHISNLP
VLFLSAKGQDEDRILGLGLGADDYIVKPFLPRELVLRLTAILRRVYIPHTPEKRPVFQLDDRLIDLEAGTIRHDGTNIPL
TAKEIALLGKFYENHNRIVTSDALCQAAWGDDYYGYENTLMVHIRRIREKIEANPSRPAHLLTVRGLGYKLIVKEE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=621032 HP435_RS25420 WP_122963710.1 5438063..5438773(+) (scnR) [Brevibacillus sp. HD3.3A]
ATGGACGAACTGAAACAGAAAAAGCTGCTTATCGTCGATGATGAGCCTGAAATCCGAAAAATGATCGAGCATTTTTTGCG
CAAGGAAGGATTCATGCGCATTTACCAGGCGGGCGATTGCAGAGAAGCGCTGGAGCTTTGTCGTTCCATCCAGCCTGACC
TCGCCATTCTTGATGTCATGCTGCCGGATGGCGACGGCTTTTCCTTGCTGCAAGCGATCCGGCATATTTCGAACTTGCCC
GTGCTGTTTTTGTCTGCCAAAGGACAGGATGAAGACCGAATCCTCGGCCTCGGACTGGGCGCGGATGATTACATCGTGAA
ACCGTTTTTGCCACGGGAGCTTGTCTTGCGGCTGACGGCTATTTTGCGCAGAGTGTACATTCCCCACACGCCGGAAAAAC
GCCCTGTTTTTCAACTGGACGACCGTCTCATTGACTTGGAGGCTGGCACCATTCGCCATGACGGAACAAATATCCCGCTG
ACCGCAAAAGAAATCGCTCTGCTCGGCAAGTTTTATGAGAACCACAATCGCATCGTCACGAGCGACGCGCTCTGTCAGGC
CGCATGGGGCGACGACTATTACGGCTATGAAAATACGCTGATGGTGCACATTCGGCGCATTCGGGAAAAAATCGAAGCGA
ATCCTTCCCGGCCCGCTCATTTGCTGACCGTGCGCGGACTCGGCTACAAGCTGATCGTAAAGGAGGAGTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-231)

Response regulator receiver domain (Response_reg)

(10-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.528

97.034

0.5
  micA Streptococcus pneumoniae Cp1015

42.174

97.458

0.411
  vicR Streptococcus mutans UA159

41.126

97.881

0.403