Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LJY22_RS13215 Genome accession   NZ_CP085843
Coordinates   2874260..2874892 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio diabolicus strain NV27     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2869260..2879892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS13190 (LJY22_13180) - 2869280..2871199 (+) 1920 WP_114324009.1 ABC transporter ATP-binding protein -
  LJY22_RS13195 (LJY22_13185) - 2871196..2871684 (+) 489 WP_005397673.1 TIGR02444 family protein -
  LJY22_RS13200 (LJY22_13190) - 2871772..2872779 (+) 1008 WP_046874535.1 hydrolase -
  LJY22_RS13205 (LJY22_13195) - 2872813..2873025 (+) 213 WP_048626696.1 YheU family protein -
  LJY22_RS13210 (LJY22_13200) - 2873150..2874019 (+) 870 WP_005397679.1 phosphoribulokinase -
  LJY22_RS13215 (LJY22_13205) crp 2874260..2874892 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  LJY22_RS13220 (LJY22_13210) - 2875038..2875829 (-) 792 WP_005397681.1 DUF1338 domain-containing protein -
  LJY22_RS13225 (LJY22_13215) astD 2876079..2877536 (-) 1458 WP_048626695.1 succinylglutamate-semialdehyde dehydrogenase -
  LJY22_RS13230 (LJY22_13220) astA 2877565..2878584 (-) 1020 WP_257897003.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=620826 LJY22_RS13215 WP_005381432.1 2874260..2874892(+) (crp) [Vibrio diabolicus strain NV27]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=620826 LJY22_RS13215 WP_005381432.1 2874260..2874892(+) (crp) [Vibrio diabolicus strain NV27]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
GAGCACGCTAATTCACGCGGGCGAAAAGGCAGAAACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAGATGATCCTTTCTTACCTAAACCAAGGAGACTTTATTGGTGAACTTGGTCTATTCGAGGAAGAC
CAAGAGCGCACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAATTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGCCTTTCTGCGCAGATGGCTCGTCGTCTTCAAGTAACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCAAAACAACCAGACGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAAATGTTAGAAGAGCAGAACTTAATCTCTGCGCACGGTAAAACTATCGTGGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471