Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LJY22_RS05020 Genome accession   NZ_CP085843
Coordinates   1085559..1087817 (+) Length   752 a.a.
NCBI ID   WP_134646961.1    Uniprot ID   -
Organism   Vibrio diabolicus strain NV27     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1080559..1092817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS04995 (LJY22_04995) - 1080918..1081487 (-) 570 WP_006742154.1 hypothetical protein -
  LJY22_RS05000 (LJY22_05000) lolC 1081737..1082945 (+) 1209 WP_257897286.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  LJY22_RS05005 (LJY22_05005) lolD 1082938..1083645 (+) 708 WP_053807148.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  LJY22_RS05010 (LJY22_05010) lolE 1083648..1084892 (+) 1245 WP_139059759.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  LJY22_RS05015 (LJY22_05015) - 1085041..1085550 (-) 510 WP_006742150.1 DUF2062 domain-containing protein -
  LJY22_RS05020 (LJY22_05020) comEC 1085559..1087817 (+) 2259 WP_134646961.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LJY22_RS05025 (LJY22_05025) msbA 1087849..1089597 (+) 1749 WP_006742148.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  LJY22_RS05030 (LJY22_05030) lpxK 1089603..1090610 (+) 1008 WP_257897287.1 tetraacyldisaccharide 4'-kinase -
  LJY22_RS05035 (LJY22_05035) - 1090591..1090770 (+) 180 WP_005390649.1 Trm112 family protein -
  LJY22_RS05040 (LJY22_05040) kdsB 1090770..1091525 (+) 756 WP_085343551.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84432.39 Da        Isoelectric Point: 8.3542

>NTDB_id=620798 LJY22_RS05020 WP_134646961.1 1085559..1087817(+) (comEC) [Vibrio diabolicus strain NV27]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVALKKVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSVSLKPITGLRNEAGFDAEKHAM
GKSIIARGVVNKDVTWIIRSTTSLRQAIIADVSEDVSSLHHFSLINALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGVVVGGAIRYALPQYQLLPSLCGLMFAVAYAWLADFSLPTTRAVSVCVIYVVLKYTLVHWASWRVLLLAVALQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIRHQNGGWKAKLKVLLLTQLMLSALIVPISGYYFSGFSLSSIAYNLAFIPWF
GFIVVPLMFLALFSSLFLEMIAKPLWQLVDWSLQPLSTSIQYAIGSWQPISIEMTGLILAGIICLVFQRFMFQYAWCLLL
GIVISIKLTSEYDQQHWRIDVLDVGHGLAVIVEKDDKVLLYDTGKAWQNGSIAEQVVTPVLHQRGYESIDTMILSHSDND
HAGGRLFIEDSFSPQRKLSSQNFIGYESCTRGDHWKWQGLNIEVLWPPALVQRAYNPHSCVLRLTDPISTFSMLFTGDIE
TISEWILLREPEKLKSDVMLVPHHGSKSSSNPRFIEAVKPSVAVASLAKNNQWGMPAEHVVAAYRKLDITWLDTGEYGQV
SFSIHRDNWRSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=620798 LJY22_RS05020 WP_134646961.1 1085559..1087817(+) (comEC) [Vibrio diabolicus strain NV27]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATTTCGTCAGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGCTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGCATTGTGGCTCTAAAAAA
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCGTCTCGTTAAAGCCGATTACAGGCCTACGCAACGAAGCTGGTTTTGACGCTGAAAAGCACGCAATG
GGTAAAAGTATTATCGCACGCGGTGTTGTTAACAAGGATGTTACCTGGATTATTCGTTCTACTACATCTTTGCGCCAAGC
CATTATCGCTGATGTTTCGGAGGATGTGTCCTCCCTTCATCATTTCTCGTTAATAAATGCGTTAGTTTTTGCCGATCGCT
CTTGGTTATCTAAGGAGGATTGGCAAGCACTCAGAGACAGTGGTTTACTGCACTTGGTCTCGATTTCGGGCTTACATATT
GGTATGGCGTTTACTTTTGGGGTAGTGGTGGGCGGTGCCATTCGTTATGCGTTACCTCAATACCAGCTATTGCCTAGCTT
ATGTGGGCTGATGTTTGCCGTTGCCTATGCTTGGTTAGCGGACTTCTCATTACCTACTACCCGCGCGGTGTCGGTATGTG
TTATTTACGTCGTTCTCAAATATACCTTAGTGCACTGGGCTTCCTGGCGGGTACTTTTGCTCGCGGTAGCGCTACAACTG
CTTGTTCAACCTTTTGCATCGTATAGCATGAGTTTTTGGTTATCGTATTTGTCAGTTTGCGCAGTGCTGTTTGCAATCAA
TTTGATTCGGCATCAAAACGGGGGCTGGAAGGCGAAGTTAAAAGTGTTATTGCTTACTCAATTGATGTTGAGTGCGTTAA
TCGTGCCTATTAGTGGCTATTACTTTTCTGGTTTCAGTTTGTCATCAATTGCATACAACTTGGCGTTTATTCCTTGGTTC
GGATTTATCGTTGTGCCTTTGATGTTTCTGGCCCTGTTCTCATCTTTATTTCTTGAAATGATAGCAAAGCCTCTGTGGCA
GTTGGTGGACTGGTCATTGCAGCCATTGAGCACGTCAATTCAGTACGCGATAGGCTCCTGGCAACCCATTAGTATAGAAA
TGACAGGGTTGATTCTGGCGGGAATTATTTGCTTGGTGTTTCAACGATTCATGTTTCAGTACGCGTGGTGTTTGTTACTT
GGCATTGTAATTAGTATTAAGCTCACATCGGAATATGATCAGCAACATTGGCGCATTGATGTACTAGATGTGGGCCATGG
CCTTGCGGTGATTGTAGAAAAAGACGATAAAGTGTTGCTCTATGATACAGGTAAAGCATGGCAAAATGGCAGTATTGCGG
AGCAGGTCGTCACTCCGGTCTTGCATCAACGAGGTTATGAAAGCATCGATACGATGATCCTCAGCCACTCCGACAATGAC
CATGCAGGAGGACGCTTGTTCATTGAAGATTCCTTTTCGCCACAGCGCAAACTCAGTAGCCAAAACTTTATCGGATATGA
GTCTTGTACTCGCGGCGATCATTGGAAATGGCAAGGGTTAAATATAGAAGTACTTTGGCCTCCTGCTCTTGTTCAACGTG
CATATAATCCGCACTCTTGTGTACTACGCCTTACCGACCCTATTTCTACGTTCAGTATGCTTTTTACTGGTGATATTGAG
ACCATTAGCGAGTGGATCTTGCTCAGGGAGCCTGAAAAGTTAAAAAGTGATGTGATGTTGGTCCCTCATCATGGTAGTAA
AAGTTCGTCGAATCCTCGCTTTATTGAGGCGGTAAAACCGAGTGTGGCCGTTGCTTCTTTGGCAAAAAATAATCAATGGG
GAATGCCGGCAGAACATGTTGTTGCAGCATATCGCAAGCTTGACATTACTTGGCTTGATACTGGGGAATATGGTCAGGTA
AGCTTCTCTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-686)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

70.612

100

0.706
  comEC Vibrio campbellii strain DS40M4

65.957

100

0.66
  comEC Vibrio cholerae strain A1552

41.987

100

0.422