Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   N646_RS09295 Genome accession   NC_022349
Coordinates   2032861..2033493 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio alginolyticus NBRC 15630 = ATCC 17749     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2027861..2038493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N646_RS09270 (N646_1880) - 2027880..2029799 (+) 1920 WP_017821748.1 ABC transporter ATP-binding protein -
  N646_RS09275 (N646_1881) - 2029796..2030284 (+) 489 WP_005382813.1 TIGR02444 family protein -
  N646_RS09280 (N646_1882) - 2030372..2031379 (+) 1008 WP_017821747.1 hydrolase -
  N646_RS09285 (N646_1883) - 2031413..2031625 (+) 213 WP_005382815.1 YheU family protein -
  N646_RS09290 (N646_1884) - 2031751..2032620 (+) 870 WP_005381434.1 phosphoribulokinase -
  N646_RS09295 (N646_1885) crp 2032861..2033493 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  N646_RS09300 (N646_1886) - 2033630..2034421 (-) 792 WP_017821746.1 DUF1338 domain-containing protein -
  N646_RS09305 (N646_1887) astD 2034670..2036127 (-) 1458 WP_017821745.1 succinylglutamate-semialdehyde dehydrogenase -
  N646_RS09310 (N646_1888) astA 2036156..2037175 (-) 1020 WP_005381422.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=62042 N646_RS09295 WP_005381432.1 2032861..2033493(+) (crp) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=62042 N646_RS09295 WP_005381432.1 2032861..2033493(+) (crp) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
GAGCACGCTAATTCACGCGGGCGAAAAGGCAGAAACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAGATGATCCTTTCTTACCTAAACCAAGGAGACTTTATTGGTGAACTTGGTCTATTCGAGGAAGAC
CAAGAGCGCACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAGTTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGTCTTTCTGCGCAGATGGCTCGTCGTCTTCAAGTAACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCAAAACAACCAGACGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATTGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
TTTGAAGATGCTAGAAGAGCAGAACCTAATCTCTGCTCACGGTAAAACCATCGTGGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment