Detailed information NTG0619908

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: NW971_RS08610
• Genome accession: NZ_CP102962
• Coordinates: 1750244..1750846 (-)
• Length: 200 a.a.
• NCBI ID: WP_258464301.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain 16CS0212
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1745244..1755846

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NW971_RS08590 (NW971_08590)	yajC	1746740..1747000 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
NW971_RS08595 (NW971_08595)	tgt	1747019..1748158 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
NW971_RS08600 (NW971_08600)	queA	1748181..1749206 (-)	1026	WP_258464300.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
NW971_RS08605 (NW971_08605)	ruvB	1749208..1750212 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
NW971_RS08610 (NW971_08610)	ruvA	1750244..1750846 (-)	603	WP_258464301.1	Holliday junction branch migration protein RuvA	Machinery gene
NW971_RS08615 (NW971_08615)	-	1750860..1751315 (-)	456	WP_000368902.1	ACT domain-containing protein	-
NW971_RS08620 (NW971_08620)	obgE	1751328..1752620 (-)	1293	WP_000496099.1	GTPase ObgE	-
NW971_RS08625 (NW971_08625)	rpmA	1752841..1753125 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
NW971_RS08630 (NW971_08630)	-	1753137..1753457 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
NW971_RS08635 (NW971_08635)	rplU	1753463..1753771 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
NW971_RS08640 (NW971_08640)	mreD	1754133..1754663 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
NW971_RS08645 (NW971_08645)	mreC	1754663..1755505 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
NW971_RS08650 (NW971_08650)	-	1755704..1755823 (-)	120	WP_000840603.1	hypothetical protein	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22288.49 Da
• Isoelectric Point: 5.7132

>NTDB_id=619908 NW971_RS08610 WP_258464301.1 1750244..1750846(-) (ruvA) [Staphylococcus aureus strain 16CS0212]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDYEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=619908 NW971_RS08610 WP_258464301.1 1750244..1750846(-) (ruvA) [Staphylococcus aureus strain 16CS0212]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATTATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGATGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA N terminal domain (RuvA_N) (1-61)

• RuvA, C-terminal domain (RuvA_C) (156-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	43.719	99.5	0.435