Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   NW949_RS07340 Genome accession   NZ_CP102960
Coordinates   1549860..1550357 (-) Length   165 a.a.
NCBI ID   WP_029694050.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 07-G-D     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1544860..1555357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW949_RS07315 (NW949_07315) gcvPB 1545022..1546494 (-) 1473 WP_258415258.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  NW949_RS07320 (NW949_07320) gcvPA 1546487..1547833 (-) 1347 WP_258415259.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW949_RS07325 (NW949_07325) gcvT 1547853..1548944 (-) 1092 WP_258415260.1 glycine cleavage system aminomethyltransferase GcvT -
  NW949_RS07330 (NW949_07330) - 1549103..1549627 (-) 525 WP_001015123.1 shikimate kinase -
  NW949_RS07335 (NW949_07335) - 1549617..1549763 (-) 147 WP_001789879.1 hypothetical protein -
  NW949_RS07340 (NW949_07340) comGF 1549860..1550357 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW949_RS07345 (NW949_07345) comGE 1550275..1550574 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  NW949_RS07350 (NW949_07350) comGD 1550561..1551007 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW949_RS07355 (NW949_07355) - 1550985..1551050 (-) 66 Protein_1441 competence protein ComGC -
  NW949_RS07360 (NW949_07360) istB 1551112..1551879 (-) 768 WP_001095317.1 IS21-like element helper ATPase IstB -
  NW949_RS07365 (NW949_07365) istA 1551891..1553126 (-) 1236 WP_258410791.1 IS21 family transposase -
  NW949_RS07370 (NW949_07370) comGC 1553224..1553499 (-) 276 WP_258415261.1 competence type IV pilus major pilin ComGC Machinery gene
  NW949_RS07375 (NW949_07375) comGB 1553513..1554583 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19199.92 Da        Isoelectric Point: 10.2192

>NTDB_id=619717 NW949_RS07340 WP_029694050.1 1549860..1550357(-) (comGF) [Staphylococcus aureus strain 07-G-D]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=619717 NW949_RS07340 WP_029694050.1 1549860..1550357(-) (comGF) [Staphylococcus aureus strain 07-G-D]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterProScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

96.97

100

0.97
  comGF Staphylococcus aureus N315

96.97

100

0.97