Detailed information NTG0061967

Bioinformatically predicted

Overview

• Name: qstR
• Type: Regulator
• Locus tag: M892_RS12635
• Genome accession: NC_022269
• Coordinates: 2739076..2739720 (-)
• Length: 214 a.a.
• NCBI ID: WP_012129010.1
• Uniprot ID: A7N147
• Organism: Vibrio campbellii ATCC BAA-1116
• Function: promote expression of competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	2740634..2741770	2739076..2739720	flank	914

Gene organization within MGE regions

Location: 2739076..2741770

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M892_RS12635 (M892_12680)	qstR	2739076..2739720 (-)	645	WP_012129010.1	LuxR C-terminal-related transcriptional regulator	Regulator
M892_RS12640 (M892_12685)	ssb	2740014..2740550 (+)	537	WP_005432828.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 214 a.a.
• Molecular weight: 24585.48 Da
• Isoelectric Point: 8.0591

>NTDB_id=61967 M892_RS12635 WP_012129010.1 2739076..2739720(-) (qstR) [Vibrio campbellii ATCC BAA-1116]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSFEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide

• Length: 645 bp

>NTDB_id=61967 M892_RS12635 WP_012129010.1 2739076..2739720(-) (qstR) [Vibrio campbellii ATCC BAA-1116]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAAGAGTTAGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTTTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGCAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACTATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, luxR family (GerE) (154-208)

3D structure

• AlphaFold DB: A7N147

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
qstR	Vibrio campbellii strain DS40M4	99.533	100	0.995
qstR	Vibrio parahaemolyticus RIMD 2210633	88.785	100	0.888
qstR	Vibrio cholerae strain A1552	52.336	100	0.523