Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   M892_RS12635 Genome accession   NC_022269
Coordinates   2739076..2739720 (-) Length   214 a.a.
NCBI ID   WP_012129010.1    Uniprot ID   A7N147
Organism   Vibrio campbellii ATCC BAA-1116     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2734076..2744720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M892_RS12625 (M892_12670) uvrA 2735078..2737900 (-) 2823 WP_012129012.1 excinuclease ABC subunit UvrA -
  M892_RS12630 (M892_12675) galU 2738039..2738911 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  M892_RS12635 (M892_12680) qstR 2739076..2739720 (-) 645 WP_012129010.1 LuxR C-terminal-related transcriptional regulator Regulator
  M892_RS12640 (M892_12685) ssb 2740014..2740550 (+) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  M892_RS12645 (M892_17550) - 2740634..2742041 (-) 1408 Protein_2453 IS4 family transposase -
  M892_RS12650 (M892_12690) csrD 2742367..2744397 (+) 2031 WP_012129007.1 RNase E specificity factor CsrD -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24585.48 Da        Isoelectric Point: 8.0591

>NTDB_id=61967 M892_RS12635 WP_012129010.1 2739076..2739720(-) (qstR) [Vibrio campbellii ATCC BAA-1116]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSFEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=61967 M892_RS12635 WP_012129010.1 2739076..2739720(-) (qstR) [Vibrio campbellii ATCC BAA-1116]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAAGAGTTAGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTTTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGCAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACTATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

99.533

100

0.995
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment