Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIS82_RS26495 Genome accession   NZ_CP085712
Coordinates   5166660..5167166 (-) Length   168 a.a.
NCBI ID   WP_053478319.1    Uniprot ID   A0A0Q3VJS1
Organism   Cytobacillus solani strain F27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5161660..5172166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS82_RS26480 (LIS82_26545) - 5162998..5163939 (-) 942 WP_053478321.1 YybS family protein -
  LIS82_RS26485 (LIS82_26550) - 5164122..5166113 (-) 1992 WP_056687009.1 methyl-accepting chemotaxis protein -
  LIS82_RS26490 (LIS82_26555) rpsR 5166373..5166609 (-) 237 WP_053478822.1 30S ribosomal protein S18 -
  LIS82_RS26495 (LIS82_26560) ssbA 5166660..5167166 (-) 507 WP_053478319.1 single-stranded DNA-binding protein Machinery gene
  LIS82_RS26500 (LIS82_26565) rpsF 5167224..5167511 (-) 288 WP_053478318.1 30S ribosomal protein S6 -
  LIS82_RS26505 (LIS82_26570) - 5167693..5168592 (-) 900 WP_082446776.1 ABC transporter permease subunit -
  LIS82_RS26510 (LIS82_26575) - 5168597..5169517 (-) 921 WP_053478317.1 ABC transporter permease -
  LIS82_RS26515 (LIS82_26580) ychF 5169661..5170761 (-) 1101 WP_056687015.1 redox-regulated ATPase YchF -
  LIS82_RS26520 (LIS82_26585) - 5170889..5171086 (-) 198 WP_053478315.1 DUF951 domain-containing protein -
  LIS82_RS26525 (LIS82_26590) yyaC 5171334..5171975 (+) 642 WP_053478314.1 spore protease YyaC -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18951.82 Da        Isoelectric Point: 4.8282

>NTDB_id=619513 LIS82_RS26495 WP_053478319.1 5166660..5167166(-) (ssbA) [Cytobacillus solani strain F27]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRTFTNQQGEREADFINCVIWRKPAENVANFLKKGSLAGVDGRIQTR
SYEGQDGKRVYVTEVQAESVQFLEPRNSNKGEGAGYGSPREQDFPFGNNNNQNQQPQYNRDNQGYTRVDKDPFANDGQID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=619513 LIS82_RS26495 WP_053478319.1 5166660..5167166(-) (ssbA) [Cytobacillus solani strain F27]
ATGATGAACCGTGTTGTTCTTGTCGGACGTTTGACAAAGGATCCAGAATTGCGGTATACCCCAAATGGAGTGCCGGTTGC
AACTTTTACTCTTGCAGTAAATCGTACGTTTACGAATCAGCAAGGTGAACGAGAAGCGGACTTTATTAACTGTGTGATTT
GGAGAAAGCCAGCAGAGAACGTAGCAAACTTTTTGAAAAAGGGAAGTCTTGCAGGTGTTGATGGGCGAATTCAAACGCGT
AGTTATGAAGGCCAAGACGGAAAGCGCGTATATGTGACTGAAGTTCAGGCTGAAAGTGTTCAATTCTTAGAACCGCGCAA
TAGTAATAAAGGCGAAGGCGCTGGCTATGGCTCTCCTAGGGAACAGGATTTCCCATTTGGGAACAACAACAATCAGAATC
AACAACCGCAGTACAACCGAGATAATCAGGGATATACACGTGTAGACAAAGATCCATTTGCCAATGACGGCCAAATTGAT
ATTTCAGATGATGATCTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q3VJS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.832

100

0.744
  ssb Latilactobacillus sakei subsp. sakei 23K

57.627

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.261

66.071

0.405