Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LIS82_RS20215 Genome accession   NZ_CP085712
Coordinates   3877497..3878258 (-) Length   253 a.a.
NCBI ID   WP_252239245.1    Uniprot ID   -
Organism   Cytobacillus solani strain F27     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3872497..3883258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS82_RS20190 (LIS82_20245) - 3872709..3873281 (-) 573 WP_053477170.1 Maf family protein -
  LIS82_RS20195 (LIS82_20250) - 3873575..3874672 (-) 1098 WP_252239241.1 stage II sporulation protein B -
  LIS82_RS20200 (LIS82_20255) - 3874812..3875840 (-) 1029 WP_252239242.1 LysM peptidoglycan-binding domain-containing protein -
  LIS82_RS20205 (LIS82_20260) - 3875840..3876490 (-) 651 WP_252239243.1 hypothetical protein -
  LIS82_RS20210 (LIS82_20265) pilM 3876493..3877482 (-) 990 WP_252239244.1 pilus assembly protein PilM -
  LIS82_RS20215 (LIS82_20270) comC 3877497..3878258 (-) 762 WP_252239245.1 A24 family peptidase Machinery gene
  LIS82_RS20220 (LIS82_20275) - 3878322..3878789 (-) 468 WP_252239246.1 type II secretion system protein -
  LIS82_RS20225 (LIS82_20280) - 3878920..3880125 (-) 1206 WP_252239247.1 type II secretion system F family protein -
  LIS82_RS20230 (LIS82_20285) pilT 3880127..3881167 (-) 1041 WP_053477178.1 type IV pilus twitching motility protein PilT Machinery gene
  LIS82_RS20235 (LIS82_20290) - 3881179..3882840 (-) 1662 WP_056687258.1 ATPase, T2SS/T4P/T4SS family -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 27563.64 Da        Isoelectric Point: 9.7186

>NTDB_id=619498 LIS82_RS20215 WP_252239245.1 3877497..3878258(-) (comC) [Cytobacillus solani strain F27]
MNILLILILIYGLALGSFYNVVGLRVPVKKSIVKPRSSCPNCNHQLTAIELIPVLSYMIQGGKCRQCKARISPIYPIMEL
ITGLLFVSAPVVLGWTAELVVAWTLISLLIIIFVTDITYMLIPDKILAVFAGIFLIERLLIPLSPWWDSLLGAAIGFTLL
LVIAIISKGGMGGGDIKLFALIGFIIGTKAMLLAFFLATLYGALFGIVGLLLKKVKRGKPIPFGPFIAAGTLTAYYFYDA
IIEAYLQYLSSGF

Nucleotide


Download         Length: 762 bp        

>NTDB_id=619498 LIS82_RS20215 WP_252239245.1 3877497..3878258(-) (comC) [Cytobacillus solani strain F27]
TTGAATATCTTATTAATATTAATCCTAATTTATGGTCTGGCACTCGGCTCCTTCTACAACGTAGTCGGCCTTCGAGTCCC
TGTCAAAAAATCAATCGTCAAACCACGCTCATCCTGTCCAAACTGCAATCATCAGTTAACAGCGATTGAGCTCATCCCTG
TGCTATCCTATATGATTCAAGGGGGAAAATGCCGCCAATGCAAGGCGCGCATTTCTCCTATCTATCCAATAATGGAGCTG
ATAACAGGGCTACTATTTGTTTCAGCACCGGTCGTATTAGGATGGACTGCAGAGCTAGTTGTGGCATGGACGCTCATTTC
ATTATTGATTATTATCTTTGTCACTGATATTACTTATATGTTGATCCCTGATAAGATTTTAGCAGTGTTTGCAGGGATTT
TTTTAATAGAGAGACTGCTGATCCCTCTCTCCCCGTGGTGGGATTCCCTTTTAGGTGCAGCAATTGGTTTTACCCTGCTG
CTTGTCATAGCCATCATTAGTAAAGGTGGCATGGGTGGAGGGGATATTAAACTATTTGCTCTTATCGGTTTTATTATCGG
TACAAAGGCGATGTTGCTAGCTTTTTTTCTTGCTACTTTATATGGTGCCCTTTTTGGAATAGTCGGGTTATTATTGAAGA
AAGTAAAAAGAGGAAAGCCAATTCCTTTTGGCCCATTTATTGCAGCAGGTACGTTAACAGCTTATTACTTTTACGATGCG
ATAATTGAAGCGTATTTGCAATATTTATCATCAGGATTTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(10-89)

Type IV leader peptidase family (Peptidase_A24)

(104-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

50

96.443

0.482
  pilD Acinetobacter nosocomialis M2

33.574

100

0.368
  pilD Acinetobacter baumannii D1279779

33.574

100

0.368