Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   M892_RS05430 Genome accession   NC_022269
Coordinates   1186780..1189038 (-) Length   752 a.a.
NCBI ID   WP_012127395.1    Uniprot ID   A7MV10
Organism   Vibrio campbellii ATCC BAA-1116     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1181780..1194038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M892_RS05410 (M892_05425) kdsB 1183066..1183824 (-) 759 WP_012127398.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M892_RS05415 (M892_05430) - 1183824..1184003 (-) 180 WP_005378451.1 Trm112 family protein -
  M892_RS05420 (M892_05435) lpxK 1183984..1184991 (-) 1008 WP_012127397.1 tetraacyldisaccharide 4'-kinase -
  M892_RS05425 (M892_05440) msbA 1184997..1186748 (-) 1752 WP_012127396.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  M892_RS05430 (M892_05445) comEC 1186780..1189038 (-) 2259 WP_012127395.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M892_RS05435 (M892_05450) - 1189047..1189556 (+) 510 WP_005431694.1 DUF2062 domain-containing protein -
  M892_RS05440 (M892_05455) lolE 1189753..1190997 (-) 1245 WP_041853211.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  M892_RS05445 (M892_05460) lolD 1191000..1191707 (-) 708 WP_012127393.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  M892_RS05450 (M892_05465) lolC 1191700..1192908 (-) 1209 WP_041853212.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  M892_RS05455 (M892_05470) - 1193173..1193742 (+) 570 WP_041853395.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84212.37 Da        Isoelectric Point: 9.7457

>NTDB_id=61947 M892_RS05430 WP_012127395.1 1186780..1189038(-) (comEC) [Vibrio campbellii ATCC BAA-1116]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRVGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTTQVTIKPILGLKNEAGFDAEKQAI
GKGITARAVTPDDAKWLIRTHSSFRQQIITAVDTHIAELDHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLLFPKFVHLPSAVGLLAALVYAWLADFSLPTARAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQTKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPISFQLAGMLWQLVDWVLLSLTWSLQFAVGSWHFVSLPLTLTILAVAICGLLRRFLNRGSFVTLV
ILVTGVALFYERTTNSWRVDVLDVGHGLAVLIEKHGKVTLYDTGKAWNSGSIAQQAISPILHRRGFGTIDMFIISHADSD
HAGGRQYIEQHFSPAQKFSSQNYANYQSCIAGERWYWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESDFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQAANAHWLDTGNHGQV
SVFIERDNWYFETKRSETFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=61947 M892_RS05430 WP_012127395.1 1186780..1189038(-) (comEC) [Vibrio campbellii ATCC BAA-1116]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGTAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGATA
GGTAAGGGTATTACCGCTAGAGCTGTCACACCTGATGACGCGAAATGGTTGATTCGTACACACTCTTCATTTCGACAGCA
AATCATTACGGCCGTTGATACTCATATTGCTGAACTTGACCATTTCCCTTTAATCAGTGCATTAGCGTTTAGCGACCGCT
CCCTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCAATCTCTGGTTTGCATATT
GGAATGGCGTTTGCGTTTGGCATGAGTTTGGGCTTTGTTATTCGGCTTCTATTCCCCAAATTTGTTCACCTTCCTTCCGC
TGTCGGTTTATTGGCAGCGCTCGTTTATGCGTGGTTGGCCGATTTTTCTTTACCTACAGCCCGTGCTTTCTCGGTTTGTG
TCATTTATCTCGTACTTAAAGCGGCGTTGGTTCATTGGAGCCCTTGGCGAGTGTTATTGCTCGCAGTCTCGATACAGCTT
TTCATCGAACCTTTTGCTTCATTCACGATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCTGTGCTTTTAGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGTGCTTACTTTGCTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTATCCATCGCTTATAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTTCCTTTGATGTTCCTAGCGCTGATTGTAACCCCAATTTCTTTTCAGTTGGCTGGTATGCTTTGGCA
ACTGGTGGATTGGGTGTTGTTGTCACTGACATGGTCATTACAGTTTGCGGTCGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTCGCAGTTGCCATCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGTTCGTTACGTTAGTC
ATTCTAGTAACGGGTGTCGCCCTATTTTATGAGCGTACAACGAATTCTTGGCGAGTGGACGTGTTAGATGTAGGGCACGG
CCTTGCGGTATTAATTGAGAAGCATGGAAAGGTGACGCTTTACGACACAGGCAAAGCTTGGAACTCAGGGAGCATCGCTC
AGCAAGCTATCTCTCCTATATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCAGGAGGTAGGCAGTATATAGAGCAGCACTTTTCGCCAGCGCAGAAATTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGTATTGGCAGGCGCTTTATTTTGAAGTCCTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTGGATAAGGAATCGGATTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGTTGGTTCCTCATCATGGTAGCAA
GAGTTCTTCGAATCCAAAATTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAGTGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGCAGCAAATGCCCACTGGCTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAACTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-672)

Competence protein (Competence)

(208-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7MV10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

97.074

100

0.971
  comEC Vibrio parahaemolyticus RIMD 2210633

65.559

100

0.656
  comEC Vibrio cholerae strain A1552

40.824

100

0.408

Multiple sequence alignment