Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LIT36_RS11865 Genome accession   NZ_CP085706
Coordinates   2455952..2456287 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain CK17     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2450952..2461287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT36_RS11845 (LIT36_11855) gcvT 2451563..2452663 (-) 1101 WP_015388009.1 glycine cleavage system aminomethyltransferase GcvT -
  LIT36_RS11850 (LIT36_11860) - 2453086..2454756 (+) 1671 WP_003153107.1 SNF2-related protein -
  LIT36_RS11855 (LIT36_11865) - 2454774..2455568 (+) 795 WP_014305407.1 YqhG family protein -
  LIT36_RS11860 (LIT36_11870) sinI 2455745..2455918 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  LIT36_RS11865 (LIT36_11875) sinR 2455952..2456287 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  LIT36_RS11870 (LIT36_11880) tasA 2456335..2457120 (-) 786 WP_015388008.1 biofilm matrix protein TasA -
  LIT36_RS11875 (LIT36_11885) sipW 2457184..2457768 (-) 585 WP_012117977.1 signal peptidase I SipW -
  LIT36_RS11880 (LIT36_11890) tapA 2457740..2458411 (-) 672 WP_015388007.1 amyloid fiber anchoring/assembly protein TapA -
  LIT36_RS11885 (LIT36_11895) - 2458671..2459000 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  LIT36_RS11890 (LIT36_11900) - 2459040..2459219 (-) 180 WP_003153093.1 YqzE family protein -
  LIT36_RS11895 (LIT36_11905) comGG 2459276..2459653 (-) 378 WP_015388005.1 competence type IV pilus minor pilin ComGG Machinery gene
  LIT36_RS11900 (LIT36_11910) comGF 2459654..2460049 (-) 396 WP_015388004.1 competence type IV pilus minor pilin ComGF -
  LIT36_RS11905 (LIT36_11915) comGE 2460063..2460377 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  LIT36_RS11910 (LIT36_11920) comGD 2460361..2460798 (-) 438 WP_015388002.1 competence type IV pilus minor pilin ComGD Machinery gene
  LIT36_RS11915 (LIT36_11925) comGC 2460788..2461096 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=619426 LIT36_RS11865 WP_003153104.1 2455952..2456287(+) (sinR) [Bacillus velezensis strain CK17]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=619426 LIT36_RS11865 WP_003153104.1 2455952..2456287(+) (sinR) [Bacillus velezensis strain CK17]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991