Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LJX93_RS07045 Genome accession   NZ_CP085704
Coordinates   1552808..1555018 (+) Length   736 a.a.
NCBI ID   WP_227696883.1    Uniprot ID   -
Organism   Pseudomonas sp. HN2-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1547808..1560018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJX93_RS07025 (LJX93_07025) - 1549691..1550314 (+) 624 WP_033700589.1 glutathione S-transferase -
  LJX93_RS07030 (LJX93_07030) - 1550447..1551379 (+) 933 WP_033700587.1 ABC transporter ATP-binding protein -
  LJX93_RS07035 (LJX93_07035) - 1551376..1552155 (+) 780 WP_033700586.1 ABC transporter permease -
  LJX93_RS07040 (LJX93_07040) - 1552168..1552665 (-) 498 Protein_1367 DUF2062 domain-containing protein -
  LJX93_RS07045 (LJX93_07045) comA 1552808..1555018 (+) 2211 WP_227696883.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LJX93_RS07050 (LJX93_07050) exbB 1555132..1555767 (+) 636 WP_047583574.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LJX93_RS07055 (LJX93_07055) - 1555764..1556198 (+) 435 WP_033700584.1 ExbD/TolR family protein -
  LJX93_RS07060 (LJX93_07060) lpxK 1556198..1557208 (+) 1011 WP_227696884.1 tetraacyldisaccharide 4'-kinase -
  LJX93_RS07065 (LJX93_07065) - 1557252..1557437 (+) 186 WP_003247142.1 Trm112 family protein -
  LJX93_RS07070 (LJX93_07070) kdsB 1557434..1558198 (+) 765 WP_033700582.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LJX93_RS07075 (LJX93_07075) - 1558198..1558662 (+) 465 WP_047583571.1 low molecular weight protein-tyrosine-phosphatase -
  LJX93_RS07080 (LJX93_07080) murB 1558659..1559678 (+) 1020 WP_033700580.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 78972.88 Da        Isoelectric Point: 10.7253

>NTDB_id=619371 LJX93_RS07045 WP_227696883.1 1552808..1555018(+) (comA) [Pseudomonas sp. HN2-3]
MRTGMFALALGLLCLGFLPVLPSVGWLLVLLLGAVASLFTRLWPLGCFVLGLCWACWSAQLALDDRLAPGLDGRTVWLEG
RVAGLPSRTAQGVRFELEQAASRRGALPRRLQLSWYDGPPLRAGEHWRLAVTLQRPAGLLNPHGPDREAQLLARRIGATG
TVKAGQVLSAVAGGWRDELRQRLLAVDANGRQAALVALVLGDGGGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAMLPLLLALVAVLLVEPL
AGLLPGLWLSFSAVAILIYCFGARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLLAVPWVSLAVLPLAL
LGTLLLPLPGFGEALLWLAGGLLDVLFRVLAVVAGWRPAWVPPALPLWAWALVGVAALLVLLPRGVPMRGLGGVMLLALW
VPREPVAAGQVEVWQLDVGQGLAVLLRTRHHSLLYDAGPAKGEYDLGERVVLPTLRKLGVGSLDLMLISHAHADHAGGAG
AIHRGLPVRRMLGGEALEGLALQPCVSGEQWEWDGVRFSLWRWAEGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERSWL
AAHGATRIDWLQSPHHGSRSSSTEAFIRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGLAIHDTAVEGALRLVLGAQG
AVEGVRGQRRFWRGGE

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=619371 LJX93_RS07045 WP_227696883.1 1552808..1555018(+) (comA) [Pseudomonas sp. HN2-3]
ATGCGCACAGGGATGTTTGCGCTCGCACTCGGGCTGCTTTGCCTGGGTTTTCTTCCCGTATTGCCATCGGTCGGATGGCT
GCTTGTACTGTTGCTCGGCGCCGTCGCCAGCCTGTTCACCCGGTTGTGGCCATTGGGCTGCTTTGTGCTGGGGCTGTGCT
GGGCGTGCTGGTCGGCCCAGCTCGCGCTGGACGATCGGCTCGCGCCTGGGCTTGATGGCCGCACAGTGTGGCTGGAGGGC
AGGGTAGCCGGCCTGCCGAGCCGCACTGCGCAAGGTGTGCGGTTCGAGCTGGAGCAGGCCGCTTCGCGGCGTGGCGCATT
GCCACGGCGCTTGCAGCTGAGCTGGTACGACGGGCCGCCACTCAGGGCGGGCGAGCATTGGCGTTTGGCGGTGACCTTGC
AGCGCCCTGCCGGGCTGCTGAACCCGCACGGGCCTGATCGCGAAGCACAGTTGCTGGCCCGGCGGATTGGCGCCACTGGC
ACGGTCAAGGCTGGGCAGGTGTTGAGCGCAGTGGCCGGTGGCTGGCGGGACGAACTGCGCCAACGCCTGCTGGCGGTCGA
TGCCAACGGCCGGCAGGCGGCGCTGGTGGCGTTGGTGCTTGGGGATGGCGGGGGCCTGGCCCGCGAGGATTGGCAGACGT
TGCAGGCCACGGGTACGGTCCACCTGCTGGTGATCTCTGGGCAGCATATCGGCCTGGTCGCGGGCCTGCTGTATGGCTTG
GTCGCCGGGCTGGCGCGGTGGGGGCTTTGGCCCGCACGGCTGCCCTGGTTGCCCTGGGCGTGTGGCTTGGCCATGGCGGC
AGCACTGGCCTATGGCTGGCTGGCCGGCGCTGGCGTACCGGTACAGCGCGCCTGCCTGATGCTGGCCGTGGTGCTGCTCT
GGCGCCTGCGTTTTCGCCACCTCGGCGCCATGCTGCCGTTGCTGCTGGCGCTGGTCGCGGTGCTGCTGGTTGAACCGTTG
GCGGGGCTGTTGCCTGGGCTCTGGCTGTCGTTTTCTGCTGTGGCCATTCTTATCTATTGCTTCGGCGCCCGGTTGGGCGG
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATCGCTATCGGTTTGCTGCCGGTGCTGCTGGCCACTGGTT
TGCCGGTGAGCCTGAGCGCGCCGCTGGCCAACCTGCTGGCGGTGCCGTGGGTCAGCCTGGCGGTTTTGCCGTTGGCGTTG
CTGGGTACGTTGCTTTTGCCCCTGCCGGGCTTCGGGGAGGCGCTGTTGTGGCTGGCTGGTGGCTTACTGGATGTGCTGTT
CAGGGTGTTGGCCGTGGTAGCGGGCTGGCGGCCAGCCTGGGTGCCGCCGGCTCTGCCGCTGTGGGCCTGGGCGTTGGTTG
GCGTGGCCGCGCTGTTGGTGTTGTTGCCCCGTGGCGTGCCCATGCGCGGGTTGGGTGGGGTCATGCTGCTGGCCCTGTGG
GTACCCAGAGAGCCGGTGGCGGCAGGGCAGGTGGAAGTCTGGCAGTTGGATGTCGGCCAGGGGCTGGCGGTACTGCTGCG
TACCCGTCATCACAGCCTGCTCTACGATGCCGGGCCGGCCAAGGGTGAGTACGACCTGGGCGAGCGGGTGGTGCTGCCAA
CCCTGCGCAAGTTGGGGGTGGGCAGCCTTGACCTGATGTTGATCAGCCACGCCCACGCCGACCATGCGGGCGGTGCTGGG
GCTATCCACCGTGGGCTGCCGGTCAGGCGGATGCTGGGTGGCGAGGCGCTGGAGGGCCTGGCGCTGCAACCATGTGTCAG
TGGGGAGCAATGGGAATGGGATGGCGTGCGCTTTTCGCTATGGCGTTGGGCTGAAGGGCAGAGCAGCAATGACCGCTCTT
GTGTGCTGCTGGTCGAGGCGCAGGGGGAGCGGCTGCTGTTGGCGGGGGATATGGAGGCGGGTGCCGAACGGTCATGGCTG
GCGGCCCACGGGGCGACACGTATCGATTGGTTGCAGTCACCGCACCATGGCAGCCGTAGTTCGTCCACCGAGGCGTTTAT
CCGCGCTACGGCGCCGCGCGGGGTACTGATTTCGCGGGGGCGTAACAACAGTTTTGGTCATCCACATGCGCAAGTGGTCG
AACGTTATCGGCGGCATGGGCTGGCGATTCATGATACGGCGGTGGAAGGCGCGTTGCGGTTGGTGTTGGGGGCGCAGGGG
GCGGTGGAAGGTGTGCGCGGGCAGCGGCGGTTTTGGCGGGGTGGGGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.053

97.554

0.576
  comA Ralstonia pseudosolanacearum GMI1000

36.211

100

0.382