Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LJX93_RS07050 Genome accession   NZ_CP085704
Coordinates   1555132..1555767 (+) Length   211 a.a.
NCBI ID   WP_047583574.1    Uniprot ID   -
Organism   Pseudomonas sp. HN2-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1550132..1560767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJX93_RS07030 (LJX93_07030) - 1550447..1551379 (+) 933 WP_033700587.1 ABC transporter ATP-binding protein -
  LJX93_RS07035 (LJX93_07035) - 1551376..1552155 (+) 780 WP_033700586.1 ABC transporter permease -
  LJX93_RS07040 (LJX93_07040) - 1552168..1552665 (-) 498 Protein_1367 DUF2062 domain-containing protein -
  LJX93_RS07045 (LJX93_07045) comA 1552808..1555018 (+) 2211 WP_227696883.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LJX93_RS07050 (LJX93_07050) exbB 1555132..1555767 (+) 636 WP_047583574.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LJX93_RS07055 (LJX93_07055) - 1555764..1556198 (+) 435 WP_033700584.1 ExbD/TolR family protein -
  LJX93_RS07060 (LJX93_07060) lpxK 1556198..1557208 (+) 1011 WP_227696884.1 tetraacyldisaccharide 4'-kinase -
  LJX93_RS07065 (LJX93_07065) - 1557252..1557437 (+) 186 WP_003247142.1 Trm112 family protein -
  LJX93_RS07070 (LJX93_07070) kdsB 1557434..1558198 (+) 765 WP_033700582.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LJX93_RS07075 (LJX93_07075) - 1558198..1558662 (+) 465 WP_047583571.1 low molecular weight protein-tyrosine-phosphatase -
  LJX93_RS07080 (LJX93_07080) murB 1558659..1559678 (+) 1020 WP_033700580.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.16 Da        Isoelectric Point: 7.3614

>NTDB_id=619372 LJX93_RS07050 WP_047583574.1 1555132..1555767(+) (exbB) [Pseudomonas sp. HN2-3]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHDLERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMIGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=619372 LJX93_RS07050 WP_047583574.1 1555132..1555767(+) (exbB) [Pseudomonas sp. HN2-3]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCGCCACACCTGCTGGGCCAGGTCTGGATATGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGTTGGGCGAAATCCTCGCTGCGGGCCTGGCCAAC
TCACGCCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCGTCGCGCGTCATCCACGACCTTGAGCGCTACAT
CAGCACCCTCGGCACCATTGCCGCGATGGCCCCGCTGCTGGGCTTGCTGGGCACCGTATTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAATGCCGCTGTGCTGGCCGGCGGTATCTCCAAGGCACTGGTCACCACCGCA
GCGGGCTTGATGATCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTAGTCGGTAT
GGAGCAAGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825