Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LJU29_RS08895 Genome accession   NZ_CP085684
Coordinates   2011860..2014076 (+) Length   738 a.a.
NCBI ID   WP_257112088.1    Uniprot ID   -
Organism   Pseudomonas ficuserectae strain ZJDX-003     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2006860..2019076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU29_RS08880 - 2009199..2009822 (+) 624 WP_004657835.1 glutathione S-transferase -
  LJU29_RS08885 - 2010006..2010938 (+) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  LJU29_RS08890 - 2010935..2011723 (+) 789 WP_002552673.1 ABC transporter permease -
  LJU29_RS08895 comA 2011860..2014076 (+) 2217 WP_257112088.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LJU29_RS08900 exbB 2014158..2014835 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LJU29_RS08905 - 2014832..2015263 (+) 432 WP_002552677.1 biopolymer transporter ExbD -
  LJU29_RS08910 lpxK 2015263..2016258 (+) 996 WP_057422140.1 tetraacyldisaccharide 4'-kinase -
  LJU29_RS08915 - 2016276..2016461 (+) 186 WP_002552679.1 Trm112 family protein -
  LJU29_RS08920 kdsB 2016458..2017222 (+) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LJU29_RS08925 murB 2017257..2018276 (+) 1020 WP_005758304.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80436.71 Da        Isoelectric Point: 9.4431

>NTDB_id=619284 LJU29_RS08895 WP_257112088.1 2011860..2014076(+) (comA) [Pseudomonas ficuserectae strain ZJDX-003]
MRTGMIALASGLVALCFLPALPPTWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALNDRLVHRLDGQTLWLQG
KVVGLPSVAEGVVRFELEGARSRRAILPARIRVAWYGGPQVNSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIDATG
TVVDGQLLTPARGAWRDLIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPWACALAFIAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILVLIFSGRLGAWNWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSLIVLPPAL
LGTLLLPVPIVGEGLLWLAGGALEWLFMFLGSVAAVLPAWLPSAMPGWAWLLSLLGAFILLLPKGVPMRPLGWPLLLLCV
FPPLDSVPAGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHADSDHAGGA
AAVHQAFPVDRVLGGELARLAPQLDARLCESDARWEWDGVVFSTWRWEQGPDGNPASCMLSVDAGGERLLLTGDIDVDAE
RAAIASGFDLRAHWLQSPHHGSRTSSSKVFLQAVGAVGVLISRGRNNAFGHPHPLVMARYRWLGMASYDSAELGAVSLRL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=619284 LJU29_RS08895 WP_257112088.1 2011860..2014076(+) (comA) [Pseudomonas ficuserectae strain ZJDX-003]
ATGCGCACAGGGATGATCGCGCTCGCGTCGGGGCTTGTGGCCTTATGCTTTCTGCCTGCTTTGCCGCCGACCTGGCTGTT
GCTGCTGATGCCGATACTGGCGTTGATGCTGCTACCGTTTCGTACCTATCCACTGGCGCTGTTCCTGCTCGGTTTTACCT
GGGCGTGTGTTTCTGCGCAGTGGGCGTTGAATGACCGTCTGGTTCATCGTCTGGACGGTCAGACGCTGTGGCTGCAAGGC
AAGGTGGTCGGTTTGCCCAGTGTCGCCGAGGGCGTGGTGCGTTTCGAACTGGAGGGGGCAAGGTCGCGCAGGGCGATATT
GCCTGCACGCATCCGGGTGGCGTGGTACGGCGGTCCGCAGGTCAACAGCGGTGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCTGATGCTTTTGATTACGAAGCCTGGCTGTTGGCGCAGCGCATCGATGCCACCGGT
ACGGTGGTGGATGGTCAACTGCTGACACCTGCGCGCGGGGCGTGGCGCGACCTTATTCGTCAGCGCTTGCTGGCGGTCGA
TGCGCAGGGCAGAGAGGGCGGCTTGGCGGCGCTGGTGCTGGGCGATGGCTCCGGGTTGTCGAGCACCGATTGGCAGGTGC
TGCAGGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGCCAGCATATCGGTTTGCTGGCCGGGGTGATTTACGCGCTG
GTCGCAGGCCTTGCACGCTGGGGGCTGTGGCCACGGGCTTTGCCCTGGCTGCCTTGGGCCTGTGCGCTGGCGTTCATCGC
TGCGCTGGGTTACGGGCTGCTGGCCGGTTTCGAGGTGCCGGTACGGCGTGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGTTTGCGCTTTCGGCACCTGGGCGTTGTCTGGCCGTTGTTACTGTCATTCAACGCGGTGCTGATTTTCGAGCCGCTG
GTGACACTGCAGCCGGGGTTCTGGCTGTCTTTCGCGGCGGTTGGCATTCTGGTGCTGATTTTCAGTGGACGTCTCGGTGC
CTGGAATTGGTGGCAAAGCTGGACGCGTGCGCAGTGGCTGATCGCAATTGGCTTGCTGCCTATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGTCCGTTTGCCAATTTGCTGGCTGTGCCTTGGGTCAGCTTGATCGTCCTGCCGCCTGCGTTG
CTTGGAACACTGCTGCTGCCGGTGCCTATTGTGGGCGAAGGCTTGCTCTGGCTGGCCGGAGGAGCGCTAGAGTGGCTGTT
TATGTTTCTCGGCTCGGTTGCCGCAGTCTTGCCCGCCTGGTTGCCCAGTGCAATGCCGGGGTGGGCGTGGCTGCTTAGTC
TGCTCGGGGCCTTCATTTTATTACTGCCCAAAGGCGTGCCGATGCGTCCGCTGGGTTGGCCATTGCTGTTGTTGTGCGTT
TTTCCGCCGCTCGACTCAGTGCCTGCAGGCCAGGTAGAAGTATTGCAGCTGGACGTGGGGCAGGGCCTAGCCATTCTCCT
GCGCACTCGAAATCACACGCTCTTGTACGACGCAGGTCCACGTTTCGGCGAGTTCGATATCGGTCAGCGTGTGGTCGTGC
CCGCCATGCGCAAGGCCGGTGTGCGTCATCTGGACCTGATGTTGATCAGTCACGCCGACTCCGATCATGCCGGGGGCGCA
GCGGCGGTTCATCAGGCATTTCCGGTTGACCGTGTACTGGGCGGTGAGCTGGCCAGGCTCGCGCCGCAACTCGACGCGCG
CTTGTGTGAGAGCGATGCGCGCTGGGAGTGGGATGGGGTGGTGTTCTCCACCTGGCGCTGGGAGCAGGGCCCTGATGGCA
ATCCGGCATCCTGCATGTTGAGTGTCGACGCCGGGGGCGAGCGTCTGCTGCTGACGGGTGATATCGACGTCGACGCGGAA
CGTGCGGCAATCGCCAGCGGTTTCGACCTTCGTGCCCATTGGTTGCAGTCCCCGCATCACGGCAGCCGGACCTCGTCATC
CAAAGTATTTCTTCAGGCCGTCGGAGCGGTTGGCGTGCTGATCTCCCGTGGCCGTAACAACGCCTTCGGCCACCCGCATC
CGTTGGTCATGGCGCGTTATCGATGGCTGGGTATGGCCAGTTATGACAGCGCTGAGCTGGGCGCTGTCAGTCTGCGGCTG
GGTACGTTCGGCACGCCGCAGGCAGAGCGCGCGCAACGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-667)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.064

97.154

0.603
  comA Ralstonia pseudosolanacearum GMI1000

32.787

100

0.379