Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LJU29_RS08900 Genome accession   NZ_CP085684
Coordinates   2014158..2014835 (+) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas ficuserectae strain ZJDX-003     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2009158..2019835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU29_RS08880 - 2009199..2009822 (+) 624 WP_004657835.1 glutathione S-transferase -
  LJU29_RS08885 - 2010006..2010938 (+) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  LJU29_RS08890 - 2010935..2011723 (+) 789 WP_002552673.1 ABC transporter permease -
  LJU29_RS08895 comA 2011860..2014076 (+) 2217 WP_257112088.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LJU29_RS08900 exbB 2014158..2014835 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LJU29_RS08905 - 2014832..2015263 (+) 432 WP_002552677.1 biopolymer transporter ExbD -
  LJU29_RS08910 lpxK 2015263..2016258 (+) 996 WP_057422140.1 tetraacyldisaccharide 4'-kinase -
  LJU29_RS08915 - 2016276..2016461 (+) 186 WP_002552679.1 Trm112 family protein -
  LJU29_RS08920 kdsB 2016458..2017222 (+) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LJU29_RS08925 murB 2017257..2018276 (+) 1020 WP_005758304.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=619285 LJU29_RS08900 WP_002552676.1 2014158..2014835(+) (exbB) [Pseudomonas ficuserectae strain ZJDX-003]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=619285 LJU29_RS08900 WP_002552676.1 2014158..2014835(+) (exbB) [Pseudomonas ficuserectae strain ZJDX-003]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGCCGCATCTGCTCGGACAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCTGACTCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAAT
TCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCT
GAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCG
GCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTACTTGCCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCC
TCCGGTCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCGCTTCCTGCAAAGTCGCGTCGATGAACTGGTGGTCGGCAT
GGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738