Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SIR_RS19485 Genome accession   NC_022246
Coordinates   1995446..1996213 (+) Length   255 a.a.
NCBI ID   WP_021003376.1    Uniprot ID   T1ZH06
Organism   Streptococcus intermedius B196     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1990446..2001213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS19455 (SIR_1899) comE 1991004..1991753 (-) 750 WP_003075488.1 competence system response regulator transcription factor ComE Regulator
  SIR_RS19460 (SIR_1900) comD/comD1 1991753..1993078 (-) 1326 WP_003075490.1 GHKL domain-containing protein Regulator
  SIR_RS19790 (SIR_1901) - 1993095..1993241 (-) 147 WP_003075491.1 bacteriocin -
  SIR_RS19475 (SIR_1903) rlmH 1993518..1993997 (-) 480 WP_003075603.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SIR_RS19480 (SIR_1904) htrA 1994201..1995391 (+) 1191 WP_020999302.1 S1C family serine protease Regulator
  SIR_RS19485 (SIR_1905) spo0J 1995446..1996213 (+) 768 WP_021003376.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29643.99 Da        Isoelectric Point: 9.1188

>NTDB_id=61925 SIR_RS19485 WP_021003376.1 1995446..1996213(+) (spo0J) [Streptococcus intermedius B196]
MEKYQYITLNDIQTNPYQPRKEFSEDKITELANSIKEHGIIQPIIVRKSPIIGYELLAGERRFRAAKLAGLTNIPAIIKE
LTDDEMITQAIIENLQREDLNPIEEAQSYQYLIDKGLTHKEIALTIGKSRPYITNSVRLLNLPSNIIEAVKEGNISQGHA
RLLINLSEKEQNHWFEKILSQELSVRKLEKQLHPKRTKTVTKNKNQLFIKEEEERLKRIFGTDISLRFSKQSQSGKICIH
FSNQEEYQRIIDSFT

Nucleotide


Download         Length: 768 bp        

>NTDB_id=61925 SIR_RS19485 WP_021003376.1 1995446..1996213(+) (spo0J) [Streptococcus intermedius B196]
ATGGAAAAATATCAATACATTACACTTAATGACATACAAACCAATCCTTATCAACCAAGAAAAGAATTTTCAGAAGACAA
AATTACTGAACTTGCTAATTCTATAAAAGAACATGGAATTATTCAGCCCATCATTGTACGAAAATCTCCAATAATTGGTT
ATGAATTACTAGCTGGTGAAAGACGTTTTAGAGCTGCTAAATTAGCAGGTTTAACTAATATACCAGCTATTATAAAAGAA
TTAACAGATGATGAAATGATAACGCAAGCTATCATTGAAAATTTACAAAGAGAAGACCTCAATCCTATAGAAGAAGCACA
ATCTTATCAATATTTAATTGACAAGGGATTGACACACAAAGAAATCGCTCTAACAATAGGAAAATCTCGCCCTTACATTA
CAAATTCTGTTCGTTTATTAAATTTACCATCCAATATCATTGAAGCAGTAAAAGAAGGAAATATCTCTCAAGGACATGCT
CGCCTGCTTATCAATCTCTCAGAAAAAGAGCAAAATCACTGGTTTGAAAAAATTCTATCTCAAGAACTTTCAGTTAGAAA
ACTAGAAAAACAATTGCACCCAAAACGAACAAAAACTGTAACAAAAAATAAAAATCAACTTTTTATCAAAGAAGAAGAAG
AAAGGTTAAAAAGGATATTTGGTACAGATATTTCACTCCGATTTTCCAAGCAGTCTCAATCTGGAAAAATCTGTATTCAC
TTTTCAAATCAAGAAGAATATCAAAGAATTATTGACAGCTTTACATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-190)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZH06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

51.562

100

0.518

Multiple sequence alignment