Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SIR_RS16795 Genome accession   NC_022246
Coordinates   1454322..1456280 (-) Length   652 a.a.
NCBI ID   WP_021003103.1    Uniprot ID   T1ZFL7
Organism   Streptococcus intermedius B196     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1449322..1461280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS16750 (SIR_1378) rpmB 1449836..1450024 (-) 189 WP_003025909.1 50S ribosomal protein L28 -
  SIR_RS16755 (SIR_1379) - 1450159..1450821 (-) 663 WP_021003102.1 LiaF transmembrane domain-containing protein -
  SIR_RS16760 (SIR_1380) - 1450827..1451273 (-) 447 WP_003073783.1 LytTR family DNA-binding domain-containing protein -
  SIR_RS16770 (SIR_1382) - 1451712..1452593 (-) 882 WP_003073785.1 class II fructose-bisphosphate aldolase -
  SIR_RS16780 (SIR_1384) - 1453006..1453416 (-) 411 WP_003073787.1 GyrI-like domain-containing protein -
  SIR_RS16785 (SIR_1385) - 1453467..1454033 (-) 567 Protein_1379 glutamine amidotransferase-related protein -
  SIR_RS16795 (SIR_1387) amiA 1454322..1456280 (-) 1959 WP_021003103.1 peptide ABC transporter substrate-binding protein Regulator
  SIR_RS16800 (SIR_1388) mraY 1456682..1457665 (-) 984 WP_003078417.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  SIR_RS16805 (SIR_1389) pbp2X 1457667..1459925 (-) 2259 WP_020999023.1 penicillin-binding protein PBP2X -
  SIR_RS16810 (SIR_1390) ftsL 1459929..1460246 (-) 318 WP_003070323.1 cell division protein FtsL -
  SIR_RS16815 (SIR_1391) rsmH 1460255..1461205 (-) 951 WP_021003104.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72550.05 Da        Isoelectric Point: 9.1519

>NTDB_id=61896 SIR_RS16795 WP_021003103.1 1454322..1456280(-) (amiA) [Streptococcus intermedius B196]
MKSSKWIIATGVVLSAGILLAGCGKSSSSTSTYSYVYTQDSDTLNYLMANRATTSDVVTNLVDGLLENDRYGNLVPALAK
SWTVSKDGLTYTYKLRKDAKWYTSEGEEYAGVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSKVGVKA
IDDYTVQYTLSRAETYWNSKTTNNILFPVNAAFLKSQGKNFGSVKPSSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTEGAYSAARLYPNSSSFASVKKQYNNNIIYSLQDATSYYYNFNLNRQSYHHTSKKTDA
QKTATQEAVLNKAFRQAINFAYNRMSYGAQSNGKDGATKVLRNTLVPPTFISIGDKTFGDLVSSKLVKYGSEWSDMNLAD
AQDAYYNPAKAKAKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGKENVVIDIQQMSSDELNNIG
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNTKNGGSLKNFGLEPGQENDKIKTVGLDTYTTMLEEANAETNETKRYE
KYAEAQAWLIDSGLTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGGSSNYFKYVKLQDKIVTTKEYESAKKKWLKEKEASN
KKAQDNYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=61896 SIR_RS16795 WP_021003103.1 1454322..1456280(-) (amiA) [Streptococcus intermedius B196]
ATGAAATCATCAAAATGGATTATTGCAACGGGAGTTGTACTAAGTGCGGGAATTTTATTGGCTGGTTGTGGCAAGTCAAG
CTCTAGCACATCGACATATTCATATGTGTATACACAAGACTCAGATACGCTGAATTATTTGATGGCGAATCGAGCAACAA
CATCAGATGTTGTTACCAATTTAGTTGATGGATTATTAGAAAATGACCGATACGGGAACTTAGTTCCAGCACTCGCTAAG
TCATGGACAGTCTCCAAAGATGGTTTGACGTATACGTATAAATTACGTAAAGACGCGAAATGGTACACATCAGAAGGCGA
AGAGTACGCAGGTGTAAAAGCACAAGACTTTGTAACTGGTTTGAAATATGCTGCAGATAACAAATCCGAAGCTCTTTACC
TTGTACAAGACTCTGTCAAAGGATTAGATGCGTATATCAAAGGGGAGACAAAAGATTTTTCAAAAGTAGGTGTAAAAGCT
ATTGATGATTATACAGTACAGTATACTCTGAGTCGTGCAGAAACTTATTGGAATTCAAAAACAACCAATAACATCCTCTT
CCCAGTCAATGCAGCCTTCTTAAAATCCCAAGGAAAGAATTTTGGTTCTGTAAAACCGAGTAGCATTCTTTACAACGGTC
CATATCTGCTGAAGTCTTTGACGGCTAAATCCTCTATGGAATTTGCAAAAAATCCTCATTATTATGACAAAAAGAATGTT
CATTTAGACAATATAAAGTTGACATATTATGATGGATCGGACCAAGAAGCGCTTATTCGAAACTTTACTGAGGGTGCTTA
TAGTGCAGCTCGTCTTTATCCAAATAGTTCTAGTTTTGCTTCTGTTAAGAAACAGTATAATAACAATATCATCTATAGTT
TACAAGATGCGACCAGTTACTATTATAACTTTAACTTAAATCGTCAGTCTTATCACCATACATCTAAGAAAACAGATGCT
CAAAAAACTGCAACACAGGAAGCAGTACTCAATAAAGCATTTCGTCAAGCAATCAATTTCGCCTACAATCGAATGTCTTA
TGGTGCGCAAAGCAATGGGAAAGATGGAGCGACAAAAGTATTGCGGAATACACTTGTTCCACCAACGTTTATTTCAATTG
GTGATAAAACATTTGGGGATCTCGTATCTTCCAAATTGGTGAAGTACGGTTCAGAATGGTCTGATATGAATTTGGCTGAT
GCACAGGATGCTTACTACAATCCAGCAAAGGCAAAAGCAAAATTTGCACAAGCAAAAGCAGAGTTGCAAGCTAAAGGAGT
TCAGTTCCCAATTCATTTGGATGTACCGGCTGATCAGACAAGTAAAATTGGCGTTCAATGGGAAAGTTCTATGAAACAAT
CCGTTGAGTCTGTTTTAGGAAAAGAGAATGTTGTCATTGATATTCAACAAATGAGTTCAGATGAACTGAACAACATTGGC
TACTTTGCTAATACTGCTGCTCAAAAAGATTATGATTTATACAATGGCGGATGGTCAGGGGACTATCAAGATCCATCAAC
TTATCTAGATACCTTGAATACAAAAAATGGTGGTAGTTTGAAGAACTTTGGCTTGGAACCTGGTCAAGAGAACGATAAGA
TAAAAACTGTTGGTTTGGATACCTATACTACAATGCTTGAGGAAGCAAATGCTGAAACCAATGAGACGAAGCGTTATGAG
AAATATGCTGAAGCGCAGGCGTGGTTAATTGATAGTGGGTTGACAATGCCAAATCTTTCTCTTGGAGGAACACCATCTGT
GACAAAGACAGTTCCGTTTAGCCGTTCATATTCTCTAGTAGGAATTAAGGGTGGTTCAAGCAACTACTTTAAATATGTTA
AGTTGCAAGATAAAATTGTGACGACCAAAGAATACGAAAGTGCTAAAAAGAAATGGCTGAAAGAAAAAGAAGCTTCTAAT
AAAAAAGCACAAGATAACTATGAAAATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZFL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.23

100

0.577
  amiA3 Streptococcus thermophilus LMD-9

57.078

100

0.575
  amiA3 Streptococcus thermophilus LMG 18311

56.925

100

0.574

Multiple sequence alignment