Detailed information NTG0618868

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LCH97_RS13455
• Genome accession: NZ_CP085530
• Coordinates: 2809693..2811024 (+)
• Length: 443 a.a.
• NCBI ID: WP_227302136.1
• Uniprot ID: -
• Organism: Vogesella sp. XCS3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2804693..2816024

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LCH97_RS13440 (LCH97_13440)	-	2805279..2805737 (-)	459	WP_227302133.1	GNAT family N-acetyltransferase	-
LCH97_RS13445 (LCH97_13445)	parC	2805868..2808162 (+)	2295	WP_370630735.1	DNA topoisomerase IV subunit A	-
LCH97_RS13450 (LCH97_13450)	-	2808167..2809696 (+)	1530	WP_227302135.1	nitrogen regulation protein NR(II)	-
LCH97_RS13455 (LCH97_13455)	pilR	2809693..2811024 (+)	1332	WP_227302136.1	sigma-54 dependent transcriptional regulator	Regulator
LCH97_RS13460 (LCH97_13460)	-	2811108..2813144 (-)	2037	WP_227302137.1	methyl-accepting chemotaxis protein	-
LCH97_RS13465 (LCH97_13465)	-	2813349..2814203 (-)	855	WP_227302138.1	LysR family transcriptional regulator	-
LCH97_RS13470 (LCH97_13470)	-	2814303..2815217 (+)	915	WP_227302139.1	DMT family transporter	-
LCH97_RS13475 (LCH97_13475)	-	2815239..2815442 (+)	204	WP_144370732.1	2-hydroxymuconate tautomerase family protein	-
LCH97_RS13480 (LCH97_13480)	-	2815512..2815772 (-)	261	WP_017507822.1	hypothetical protein	-

Sequence

Protein

• Length: 443 a.a.
• Molecular weight: 48284.35 Da
• Isoelectric Point: 5.1528

>NTDB_id=618868 LCH97_RS13455 WP_227302136.1 2809693..2811024(+) (pilR) [Vogesella sp. XCS3]
MSRVLIVDDEPDIRELLQLTLLKMGLEVDSAASVGDACSKLARQRFELVLTDMRLPDGEGLQVVQYIAEQQLDIPVAVIT
AFGSTENAVAAMKAGAFDYLAKPLSLAALRALVKSAIRLPAAAANPAMAGERLLGEAPAMQEVRKLIAKLARSQAAVHIS
GESGTGKEQAARQIHEQSPRAGKPFVAVNCGAIPENLMESEFFGSKKGAYTGADADREGFFQQAHGGTLFLDEVADLPLA
MQVKLLRVIQEKTVRRLGATQEEAIDVRILSATHRNLPQAVSDGLFRQDLFYRLNVISLAMPALRELRDDIPRFVGALLD
RFAGSSEVRPRLTPDAVKALLAYHYPGNFRELENILERAVALCSDDRIEPEDLQLGACPDSLAEGDTLVPGSSETLQDYL
DRVERVAIEAALQQSEGNRTQAAKLLGVSFRSLRYRLERLGMK

Nucleotide

• Length: 1332 bp

>NTDB_id=618868 LCH97_RS13455 WP_227302136.1 2809693..2811024(+) (pilR) [Vogesella sp. XCS3]
ATGAGCCGCGTACTGATCGTTGACGACGAACCCGATATCCGCGAACTGCTGCAACTGACCCTGTTGAAGATGGGGCTGGA
AGTAGACAGCGCCGCCTCGGTAGGCGACGCCTGCAGCAAGCTGGCCCGCCAGCGTTTCGAGCTGGTACTCACCGATATGC
GTCTGCCCGACGGCGAAGGCCTGCAGGTGGTGCAGTACATTGCCGAACAGCAGCTGGATATTCCGGTGGCGGTGATTACC
GCTTTTGGCAGTACCGAAAACGCCGTAGCCGCCATGAAGGCCGGCGCGTTTGACTACCTGGCCAAGCCGCTGAGCCTGGC
CGCGCTGCGCGCCCTGGTGAAGTCGGCCATCCGCCTGCCTGCCGCTGCGGCCAACCCTGCCATGGCGGGTGAACGCCTGC
TGGGCGAGGCCCCGGCCATGCAAGAGGTACGCAAGCTGATTGCCAAGCTGGCGCGCAGCCAGGCGGCGGTGCATATCAGC
GGTGAATCGGGTACCGGTAAAGAGCAGGCTGCCCGCCAGATACACGAACAAAGCCCCCGCGCCGGCAAACCCTTTGTGGC
GGTGAACTGCGGTGCCATTCCGGAAAACCTGATGGAGAGCGAGTTTTTCGGCAGCAAGAAAGGCGCGTATACCGGTGCGG
ATGCCGACCGAGAAGGCTTCTTTCAGCAGGCACACGGCGGTACGCTGTTTCTGGACGAGGTGGCCGACCTGCCGCTGGCC
ATGCAGGTCAAGCTGCTGCGCGTGATCCAGGAAAAAACCGTGCGTCGCCTGGGGGCCACGCAAGAAGAAGCCATCGATGT
ACGCATCCTGTCGGCCACGCACCGCAACCTGCCCCAGGCAGTAAGCGATGGCTTGTTCCGCCAGGATCTGTTCTACCGGC
TGAACGTCATCAGCCTGGCCATGCCGGCGCTGCGCGAGCTGCGCGACGATATTCCGCGCTTTGTCGGCGCCCTGCTCGAC
CGCTTTGCCGGCAGCAGCGAGGTGCGCCCGCGCCTGACCCCCGACGCGGTAAAAGCCCTGCTGGCCTACCATTACCCGGG
CAATTTCCGCGAGCTGGAAAACATTCTGGAACGCGCGGTGGCGTTGTGTAGCGACGATCGTATCGAGCCGGAAGACCTGC
AGCTGGGTGCCTGCCCGGATAGCCTGGCCGAGGGTGACACGCTGGTGCCGGGCAGCAGCGAAACCCTGCAAGACTACCTG
GACCGCGTGGAGCGGGTGGCGATAGAAGCGGCTTTGCAGCAAAGCGAGGGCAACCGTACCCAGGCGGCCAAGCTGCTGGG
GGTAAGCTTCCGCTCGCTGCGCTACCGGCTGGAGAGGCTGGGGATGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (400-439)

• Response regulator receiver domain (Response_reg) (4-113)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	57.978	100	0.582
pilR	Acinetobacter baumannii strain A118	41.921	100	0.433
luxO	Vibrio cholerae strain A1552	37.054	100	0.375