Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SIR_RS14465 Genome accession   NC_022246
Coordinates   947315..948118 (-) Length   267 a.a.
NCBI ID   WP_003075634.1    Uniprot ID   A0AAD1FJP4
Organism   Streptococcus intermedius B196     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 942315..953118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS14450 (SIR_0925) smc 942338..945871 (-) 3534 WP_021002809.1 chromosome segregation protein SMC -
  SIR_RS14455 (SIR_0926) rnc 945862..946560 (-) 699 WP_021002810.1 ribonuclease III -
  SIR_RS14460 (SIR_0927) - 946947..947306 (-) 360 WP_003072977.1 YbaN family protein -
  SIR_RS14465 (SIR_0928) vicX 947315..948118 (-) 804 WP_003075634.1 MBL fold metallo-hydrolase Regulator
  SIR_RS14470 (SIR_0929) micB 948120..949472 (-) 1353 WP_003072979.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SIR_RS14475 (SIR_0930) micA 949465..950166 (-) 702 WP_003072980.1 response regulator YycF Regulator
  SIR_RS14480 (SIR_0931) - 950464..950805 (-) 342 WP_021002811.1 hypothetical protein -
  SIR_RS14485 (SIR_0932) - 950832..952145 (-) 1314 WP_003072983.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29893.80 Da        Isoelectric Point: 6.0341

>NTDB_id=61879 SIR_RS14465 WP_003075634.1 947315..948118(-) (vicX) [Streptococcus intermedius B196]
MNEKGFKYSILASGSTGNCFYLETPKRKLLIDAGLSGKKITSLLSEIDRKPEDLDAILVTHEHKDHIHGVGVLARKYHLD
IYANQDTWNAMETALGKIDVSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRLMKDDKSFVLLTDTGYVSDRMAGII
ENADGYLIESNHDIEILRSGAYPWSLKQRILSDQGHLSNDDGAETMIRTLGIRTKKIYLGHLSKENNTKELAHITMVNQL
AQADLAVEHDFHVYDTSPDTATPLTNI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=61879 SIR_RS14465 WP_003075634.1 947315..948118(-) (vicX) [Streptococcus intermedius B196]
ATGAACGAGAAAGGATTTAAGTACAGTATTTTAGCATCGGGTTCTACTGGTAATTGTTTCTATTTAGAAACCCCGAAGAG
AAAGTTGTTGATTGATGCAGGTTTATCCGGAAAGAAAATTACTAGTTTGTTGAGCGAAATTGATCGTAAGCCAGAGGATT
TGGATGCTATTTTGGTGACGCATGAACATAAAGACCATATTCATGGTGTGGGTGTTTTAGCACGGAAATATCATTTAGAT
ATTTATGCTAATCAAGATACTTGGAATGCCATGGAAACAGCGCTTGGAAAGATTGATGTCAGTCAGAAGCATATTTTTGA
AATGGGAAAAACGAAAACATTTGGTGATATTGATATTGAAAGTTTTGGGGTCAGTCATGATGCGGTTGCACCACAATTCT
ATCGATTGATGAAAGATGACAAAAGTTTTGTTTTGCTGACGGACACTGGTTATGTCAGTGATCGGATGGCAGGAATCATT
GAAAATGCAGATGGCTATTTGATTGAATCAAATCATGATATTGAAATCCTGCGCAGTGGTGCTTATCCTTGGAGTTTAAA
GCAGCGAATTTTGTCTGATCAAGGGCATTTGTCAAATGATGATGGTGCTGAAACTATGATTCGCACTCTTGGGATTCGGA
CAAAGAAAATCTATCTAGGACATCTCAGCAAGGAAAATAATACTAAAGAATTGGCTCATATTACAATGGTCAATCAATTG
GCACAAGCTGACTTGGCAGTGGAGCATGATTTTCATGTGTATGATACCTCACCAGATACGGCGACACCTTTAACCAATAT
TTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

81.273

100

0.813

Multiple sequence alignment