Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   NWO26_RS06420 Genome accession   NZ_CP102797
Coordinates   1262218..1262535 (-) Length   105 a.a.
NCBI ID   WP_011681685.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST057-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1257218..1267535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWO26_RS06385 - 1257576..1258238 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  NWO26_RS06390 - 1258335..1258778 (-) 444 WP_113870473.1 CAAX protease -
  NWO26_RS06395 - 1258852..1259190 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  NWO26_RS06400 - 1259234..1259509 (-) 276 WP_011681681.1 hypothetical protein -
  NWO26_RS06405 - 1259521..1259719 (-) 199 Protein_1263 helix-turn-helix transcriptional regulator -
  NWO26_RS06410 - 1259968..1261161 (-) 1194 WP_014608740.1 acetate kinase -
  NWO26_RS06415 comGH 1261217..1262173 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  NWO26_RS06420 comGG 1262218..1262535 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG Machinery gene
  NWO26_RS06425 comGF 1262513..1262950 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  NWO26_RS06430 comGE 1262934..1263227 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  NWO26_RS06435 comGD 1263199..1263627 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  NWO26_RS06440 comGC 1263587..1263913 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  NWO26_RS06445 comGB 1263910..1265010 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  NWO26_RS06450 comGA/cglA/cilD 1264892..1265833 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  NWO26_RS06455 - 1265914..1266276 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11851.01 Da        Isoelectric Point: 10.6334

>NTDB_id=618309 NWO26_RS06420 WP_011681685.1 1262218..1262535(-) (comGG) [Streptococcus thermophilus strain ST057-1]
MLLKKQVRGGVLLYALFMAGIFILLLQVYLERVVASSRQNQAQIVASQSRLMAEMTMDLVDKEAGAFSFSQGTTTYEVKG
KQVVVRVVSKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=618309 NWO26_RS06420 WP_011681685.1 1262218..1262535(-) (comGG) [Streptococcus thermophilus strain ST057-1]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTATACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGGTTGTCAGAGTTGTCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429
  comGG Streptococcus mutans UA159

45.455

94.286

0.429
  comGG/cglG Streptococcus pneumoniae Rx1

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae TIGR4

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae D39

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae R6

43.333

85.714

0.371
  comGG/cglG Streptococcus mitis NCTC 12261

42.222

85.714

0.362