Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIT34_RS21335 Genome accession   NZ_CP085431
Coordinates   4107065..4108306 (-) Length   413 a.a.
NCBI ID   WP_029320633.1    Uniprot ID   A0A2B9R3H9
Organism   Priestia megaterium strain F20     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4102065..4113306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT34_RS21315 (LIT34_21345) spoVS 4102625..4102885 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  LIT34_RS21320 (LIT34_21350) - 4103109..4103906 (-) 798 WP_029320635.1 TIGR00282 family metallophosphoesterase -
  LIT34_RS21325 (LIT34_21355) rny 4103988..4105547 (-) 1560 WP_013058803.1 ribonuclease Y -
  LIT34_RS21330 (LIT34_21360) recA 4105828..4106865 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  LIT34_RS21335 (LIT34_21365) cinA 4107065..4108306 (-) 1242 WP_029320633.1 competence/damage-inducible protein A Machinery gene
  LIT34_RS21340 (LIT34_21370) pgsA 4108323..4108907 (-) 585 WP_013058806.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT34_RS21345 (LIT34_21375) - 4109052..4110029 (-) 978 WP_223268970.1 helix-turn-helix domain-containing protein -
  LIT34_RS21350 (LIT34_21380) - 4110042..4110833 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  LIT34_RS21355 (LIT34_21385) - 4111047..4111307 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  LIT34_RS21360 (LIT34_21390) - 4111373..4112098 (-) 726 WP_013058810.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44929.02 Da        Isoelectric Point: 4.9898

>NTDB_id=618092 LIT34_RS21335 WP_029320633.1 4107065..4108306(-) (cinA) [Priestia megaterium strain F20]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRVMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHANAAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGSGEAVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLYKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKDQAPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=618092 LIT34_RS21335 WP_029320633.1 4107065..4108306(-) (cinA) [Priestia megaterium strain F20]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAAACGCGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTGTCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCGGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGGTAGAGGGAAAACACTATATGCTATTTCCCGGGCCACCAAAAGAGCTTTATCCAATG
TATGAATCGTATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGTGTTCTTCGCTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAACCCGACGATTGCGCCGCTAG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTAATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCCGAAAGTTTAACCGGCGGTTTATTCAGCGAACGTTTAACAACTGTTT
CAGGTTCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATACAAAAC
GGATATTGGCATCGGGTTTACAGGTGTAGCTGGGCCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGGG
TAGCCTATAAAGATCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGCCGCCAGGGGATTCGTTCACGAACGGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAGAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B9R3H9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.024

99.274

0.586
  cinA Streptococcus mitis NCTC 12261

46.667

100

0.475
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.47
  cinA Streptococcus mitis SK321

45.952

100

0.467
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.465
  cinA Streptococcus pneumoniae R6

45.714

100

0.465
  cinA Streptococcus pneumoniae D39

45.476

100

0.462
  cinA Streptococcus mutans UA159

44.634

99.274

0.443
  cinA Streptococcus suis isolate S10

39.418

91.525

0.361