Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIT34_RS21330 Genome accession   NZ_CP085431
Coordinates   4105828..4106865 (-) Length   345 a.a.
NCBI ID   WP_013058804.1    Uniprot ID   A0A8D3WWJ0
Organism   Priestia megaterium strain F20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4100828..4111865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT34_RS21305 (LIT34_21335) - 4101271..4101447 (-) 177 WP_155660653.1 hypothetical protein -
  LIT34_RS21310 (LIT34_21340) - 4101632..4102549 (-) 918 WP_013058801.1 dipeptidase -
  LIT34_RS21315 (LIT34_21345) spoVS 4102625..4102885 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  LIT34_RS21320 (LIT34_21350) - 4103109..4103906 (-) 798 WP_029320635.1 TIGR00282 family metallophosphoesterase -
  LIT34_RS21325 (LIT34_21355) rny 4103988..4105547 (-) 1560 WP_013058803.1 ribonuclease Y -
  LIT34_RS21330 (LIT34_21360) recA 4105828..4106865 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  LIT34_RS21335 (LIT34_21365) cinA 4107065..4108306 (-) 1242 WP_029320633.1 competence/damage-inducible protein A Machinery gene
  LIT34_RS21340 (LIT34_21370) pgsA 4108323..4108907 (-) 585 WP_013058806.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT34_RS21345 (LIT34_21375) - 4109052..4110029 (-) 978 WP_223268970.1 helix-turn-helix domain-containing protein -
  LIT34_RS21350 (LIT34_21380) - 4110042..4110833 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  LIT34_RS21355 (LIT34_21385) - 4111047..4111307 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37395.27 Da        Isoelectric Point: 4.8279

>NTDB_id=618091 LIT34_RS21330 WP_013058804.1 4105828..4106865(-) (recA) [Priestia megaterium strain F20]
MNDRQAALDMALKQIEKQFGKGSIMKLGEQTEKRISTIPSGSLALDIALGVGGYPRGRVVEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKT
RIKVVKNKVAPPFRAAEVDIMYGEGISKEGEILDIASELDIVQKSGSWYSYNDERLGQGRENAKQFLKENTDIRQEIAGQ
VREHHGLDQDGEPAPEDDDQGDLNI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=618091 LIT34_RS21330 WP_013058804.1 4105828..4106865(-) (recA) [Priestia megaterium strain F20]
GTGAACGATCGTCAAGCAGCCCTTGATATGGCTTTAAAACAAATTGAAAAGCAATTTGGTAAAGGTTCAATTATGAAATT
AGGTGAACAAACGGAAAAAAGAATTTCTACAATTCCAAGTGGTTCATTAGCGTTAGATATAGCTTTAGGTGTAGGTGGAT
ATCCACGTGGACGTGTAGTTGAAGTATACGGTCCAGAAAGCTCAGGTAAAACAACAGTTGCTCTTCATGCGATTGCAGAA
GTTCAACAGCAGGGCGGACAGGCTGCATTTATCGATGCGGAGCACGCGTTAGATCCTGTATATGCTCAAAAATTAGGTGT
GAATATTGATGAGCTATTATTATCTCAGCCTGATACGGGAGAACAAGCGTTAGAAATCGCTGAAGCTTTAGTTCGAAGCG
GTGCCGTAGATATTATCGTTGTTGACTCAGTAGCAGCATTAGTGCCAAAAGCGGAAATTGAAGGAGAAATGGGAGACTCT
CACGTGGGTCTACAAGCTCGTTTAATGTCTCAAGCATTGCGTAAACTATCTGGAGCTATCAACAAGTCTAAAACAATCGC
TATCTTTATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTTGGTAACCCTGAAACAACTCCTGGTGGACGTGCGCTTA
AATTCTATTCTTCAGTGCGTCTAGAAGTACGTCGTGCAGAGCAGTTAAAGCAAGGAAACGATATTGTAGGTAACAAAACA
AGAATTAAAGTTGTGAAAAACAAAGTAGCTCCGCCTTTCCGTGCTGCTGAAGTAGATATTATGTACGGAGAAGGTATTTC
AAAAGAGGGTGAAATTTTGGATATCGCTTCTGAACTAGATATTGTTCAAAAAAGTGGATCTTGGTATTCATATAATGACG
AGCGTCTAGGTCAAGGTCGTGAAAATGCAAAACAATTCTTAAAAGAAAATACTGATATTCGTCAGGAAATTGCGGGACAA
GTGCGTGAACATCATGGTTTAGACCAAGATGGAGAGCCAGCTCCTGAGGATGACGATCAAGGCGATTTAAATATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90.332

95.942

0.867
  recA Latilactobacillus sakei subsp. sakei 23K

74.184

97.681

0.725
  recA Streptococcus pneumoniae D39

69.591

99.13

0.69
  recA Streptococcus pneumoniae Rx1

69.591

99.13

0.69
  recA Streptococcus pneumoniae R6

69.591

99.13

0.69
  recA Streptococcus pneumoniae TIGR4

69.591

99.13

0.69
  recA Streptococcus mitis NCTC 12261

70.118

97.971

0.687
  recA Streptococcus mitis SK321

70.118

97.971

0.687
  recA Streptococcus mutans UA159

65.634

100

0.675
  recA Lactococcus lactis subsp. cremoris KW2

67.857

97.391

0.661
  recA Streptococcus pyogenes NZ131

68.693

95.362

0.655
  recA Neisseria gonorrhoeae strain FA1090

63.158

99.13

0.626
  recA Neisseria gonorrhoeae MS11

63.158

99.13

0.626
  recA Neisseria gonorrhoeae MS11

63.158

99.13

0.626
  recA Ralstonia pseudosolanacearum GMI1000

66.562

91.884

0.612
  recA Vibrio cholerae strain A1552

65.109

93.043

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

93.043

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.111

99.13

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

95.072

0.6
  recA Acinetobacter baumannii D1279779

60.526

99.13

0.6
  recA Helicobacter pylori strain NCTC11637

61.012

97.391

0.594
  recA Helicobacter pylori 26695

61.012

97.391

0.594
  recA Pseudomonas stutzeri DSM 10701

63.75

92.754

0.591
  recA Acinetobacter baylyi ADP1

62.848

93.623

0.588
  recA Glaesserella parasuis strain SC1401

63.323

92.464

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

93.043

0.571