Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LIT28_RS00220 Genome accession   NZ_CP085409
Coordinates   40423..40707 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain KF1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35423..45707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT28_RS00185 (LIT28_00185) tmk 35577..36203 (+) 627 WP_097952521.1 dTMP kinase -
  LIT28_RS00190 (LIT28_00190) holB 36239..37222 (+) 984 WP_063222196.1 DNA polymerase III subunit delta' -
  LIT28_RS00195 (LIT28_00195) - 37228..38055 (+) 828 WP_063222223.1 stage 0 sporulation family protein -
  LIT28_RS00200 (LIT28_00200) yabA 38070..38420 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  LIT28_RS00205 (LIT28_00205) - 38541..39281 (+) 741 WP_242256559.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LIT28_RS00210 (LIT28_00210) - 39268..39558 (+) 291 WP_060629172.1 GIY-YIG nuclease family protein -
  LIT28_RS00215 (LIT28_00215) rsmI 39527..40402 (+) 876 WP_242256558.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LIT28_RS00220 (LIT28_00220) abrB 40423..40707 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LIT28_RS00225 (LIT28_00225) metG 41225..43207 (+) 1983 WP_242256557.1 methionine--tRNA ligase -
  LIT28_RS00230 (LIT28_00230) - 43374..44141 (+) 768 WP_242256556.1 TatD family hydrolase -
  LIT28_RS00235 (LIT28_00235) rnmV 44334..44891 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=617850 LIT28_RS00220 WP_000843036.1 40423..40707(-) (abrB) [Bacillus thuringiensis strain KF1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=617850 LIT28_RS00220 WP_000843036.1 40423..40707(-) (abrB) [Bacillus thuringiensis strain KF1]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACGTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851